Basic information
Locus name	AT1G56170
Alias	ATHAP5B/HAP5B
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:CCAAT-HAP5
Effect for Senescence	unclear
Gene Description	Symbol: HAP5B | transcription factor, putative, similar to Transcription factor GB:CAA74053 GI:2398533 from (Arabidopsis thaliana) similarity to transcription factor Hap5a similar to transcription factor Hap5a (Arabidopsis thaliana)(GI:6523090) | chr1:21028429-21029548 FORWARD | Aliases: ATHAP5B, F14G9.21
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	cellular component intracellular molecular function protein heterodimerization activity sequence-specific DNA binding
Sequence	AT1G56170.1 | Genomic | mRNA | CDS | Protein AT1G56170.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_128092	Accession Taxon NP_001032130 Arabidopsis thaliana NP_001077726 ( AT1G56170 ) Arabidopsis thaliana NP_176013 Arabidopsis thaliana NP_190428 Arabidopsis thaliana NP_201152 Arabidopsis thaliana CMK073C Cyanidioschyzon merolae strain 10D 117655 Chlamydomonas reinhardtii ACO70405 Micromonas sp. RCC299 NP_001046029 Oryza sativa Japonica Group NP_001058312 Oryza sativa Japonica Group NP_001062136 Oryza sativa Japonica Group NP_001063489 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_11.00010026 Ostreococcus tauri e_gw1.315.24.1 Physcomitrella patens subsp. patens e_gw1.51.131.1 Physcomitrella patens subsp. patens gw1.158.69.1 Physcomitrella patens subsp. patens gw1.159.100.1 Physcomitrella patens subsp. patens gw1.370.25.1 Physcomitrella patens subsp. patens gw1.409.22.1 Physcomitrella patens subsp. patens 30147.m014493 Ricinus communis 30169.m006305 Ricinus communis e_gw1.3.585.1 Thalassiosira pseudonana CCMP1335 XP_002946507 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10252 2.7E-78 11 187 No hit NA SUPERFAMILY SSF47113 8.7E-36 34 148 IPR009072 Histone-fold Pfam PF00808 1.7E-22 76 139 IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytoplasm and nucleus Evidence Localization with GFP-ORF fusion protein (GFP:cDNA) Pubmed ID 15610358
Localization 3 Localization nucleus Evidence SUBAcon Pubmed ID 23180787