Basic information
Locus name	AT2G28710
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:C2H2
Effect for Senescence	unclear
Gene Description	zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function zinc ion binding
Sequence	AT2G28710.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_176437	Accession Taxon NP_180439 ( AT2G28710 ) Arabidopsis thaliana NP_001049734 Oryza sativa Japonica Group NP_001054460 Oryza sativa Japonica Group 29154.m000218 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR26374 2.2E-47 6 151 No hit NA SUPERFAMILY SSF57667 7.4E-8 32 100 No hit NA Pfam PF13912 1.3E-9 33 58 No hit NA ProSiteProfiles PS50157 9.4 34 61 IPR007087 Zinc finger, C2H2 SMART SM00355 0.2 34 56 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 36 56 IPR007087 Zinc finger, C2H2 Pfam PF13912 8.4E-8 78 102 No hit NA ProSiteProfiles PS50157 9.8 78 105 IPR007087 Zinc finger, C2H2 SMART SM00355 0.1 78 100 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 80 100 IPR007087 Zinc finger, C2H2