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| Locus name | AT2G28200 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:C2H2 |
| Effect for Senescence | unclear |
| Gene Description | zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G28200.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G28200.1
miRNA: ath-miR1886
miRNA: ath-miR1886
mfe: -22.9 kcal/mol
p-value: 0.007713
position: 345
target 5' A C C C 3'
CAA UCGG GGUUUCGUCUC
GUU AGUU CUAAAGUAGAG
miRNA 3' G U U 5'
target: AT2G28200.1
miRNA: ath-miR773
miRNA: ath-miR773
mfe: -23.9 kcal/mol
p-value: 0.034069
position: 186
target 5' A U 3'
AGAU GAGGUUGGGAGUGA
UCUG UUUCGACCUUCGUU
miRNA 3' C U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_177697 | |
| Cross Link | |
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