Basic information
Locus name	AT3G62960
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation:Antioxidants
Effect for Senescence	unclear
Gene Description	glutaredoxin family protein contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase)
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process cell redox homeostasis molecular function electron carrier activity protein disulfide oxidoreductase activity
Sequence	AT3G62960.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G62960.1  miRNA: ath-miR168a miRNA: ath-miR168a mfe: -31.6 kcal/mol  p-value: 0.001972  position:  243  target 5' G                C    U 3'             UCUUGG CUGCGCCAA GCGG              AGGGCU GACGUGGUU CGCU   miRNA  3' A      G                5'  target: AT3G62960.1  miRNA: ath-miR168b miRNA: ath-miR168b mfe: -31.6 kcal/mol  p-value: 0.003674  position:  243  target 5' G                C    U 3'             UCUUGG CUGCGCCAA GCGG              AGGGCU GACGUGGUU CGCU   miRNA  3' A      G                5'
Ortholog Group
Ortholog Groups: OG5_177471	Accession Taxon NP_172168 Arabidopsis thaliana NP_180612 Arabidopsis thaliana NP_182309 Arabidopsis thaliana NP_191855 ( AT3G62960 ) Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10168 1.1E-37 1 95 No hit NA ProSiteProfiles PS51354 19.4 1 101 IPR002109 Glutaredoxin SUPERFAMILY SSF52833 1.9E-21 1 97 IPR012336 Thioredoxin-like fold TIGRFAM TIGR02189 1.4E-40 4 98 IPR011905 Glutaredoxin-like, plant II Pfam PF00462 2.5E-11 13 75 IPR002109 Glutaredoxin PRINTS PR00160 1.7E-5 13 31 IPR014025 Glutaredoxin subgroup PRINTS PR00160 1.7E-5 58 71 IPR014025 Glutaredoxin subgroup PRINTS PR00160 1.7E-5 72 85 IPR014025 Glutaredoxin subgroup
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787