Basic information
Locus name	AT4G34900
Alias	AtXDH2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation:purine remobilization
Effect for Senescence	delay
Gene Description	XXANTHINE DEHYDROGENASE 2 (XDH2)
Evidence	Molecular evidence:RT-PCR [Ref 1]
References	1: Brychkova G, Alikulov Z, Fluhr R, Sagi M A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant. Plant J. 2008 May;54(3):496-509
Gene Ontology	biological process oxidation-reduction process molecular function electron carrier activity iron ion binding iron-sulfur cluster binding metal ion binding oxidoreductase activity
Sequence	AT4G34900.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G34900.1  miRNA: ath-miR776 miRNA: ath-miR776 mfe: -22.6 kcal/mol  p-value: 0.107994  position:  2202  target 5' G       G G            A 3'             AACA CA A AGAAGGCUUAGA              UUGU GU U UCUUCUGAAUCU   miRNA  3'      A    A              5'  target: AT4G34900.1  miRNA: ath-miR857 miRNA: ath-miR857 mfe: -25.0 kcal/mol  p-value: 0.025662  position:  3441  target 5' C   U                C 3'             UGC ACUUUCAACGUAUAGA              AUG UGGAAGUUGUAUGUUU   miRNA  3' U                    U 5'
Ortholog Group
Ortholog Groups: OG5_127252	Accession Taxon NP_001077966 Arabidopsis thaliana NP_180283 Arabidopsis thaliana NP_189946 Arabidopsis thaliana NP_195215 Arabidopsis thaliana NP_195216 ( AT4G34900 ) Arabidopsis thaliana NP_563711 Arabidopsis thaliana NP_568407 Arabidopsis thaliana NP_851049 Arabidopsis thaliana 117669 Chlamydomonas reinhardtii ACO65070 Micromonas sp. RCC299 NP_001050420 Oryza sativa Japonica Group NP_001051517 Oryza sativa Japonica Group NP_001051518 Oryza sativa Japonica Group NP_001058964 Oryza sativa Japonica Group NP_001059379 Oryza sativa Japonica Group NP_001064133 Oryza sativa Japonica Group e_gw1.170.7.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_440069 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_930001 Physcomitrella patens subsp. patens 29976.m000486 Ricinus communis 30169.m006431 Ricinus communis 47744.m000020 Ricinus communis estExt_thaps1_ua_kg.C_chr_220040 Thalassiosira pseudonana CCMP1335 XP_002953715 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF000127 0.0 1 1353 IPR016208 Aldehyde oxidase/xanthine dehydrogenase ProSiteProfiles PS51085 9.8 7 93 IPR001041 2Fe-2S ferredoxin-type domain SUPERFAMILY SSF54292 2.1E-19 7 93 IPR001041 2Fe-2S ferredoxin-type domain PANTHER PTHR11908 0.0 9 1342 No hit NA Pfam PF00111 3.6E-8 12 78 IPR001041 2Fe-2S ferredoxin-type domain ProSitePatterns PS00197 NA 45 53 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Pfam PF01799 6.8E-28 90 164 IPR002888 [2Fe-2S]-binding SUPERFAMILY SSF47741 5.0E-31 101 170 IPR002888 [2Fe-2S]-binding SUPERFAMILY SSF56176 2.6E-59 228 432 IPR016166 FAD-binding, type 2 ProSiteProfiles PS51387 24.3 249 434 IPR016166 FAD-binding, type 2 Pfam PF00941 1.2E-50 254 431 IPR002346 Molybdopterin dehydrogenase, FAD-binding SUPERFAMILY SSF55447 1.8E-32 436 550 IPR005107 CO dehydrogenase flavoprotein, C-terminal SMART SM01092 8.6E-22 439 545 IPR005107 CO dehydrogenase flavoprotein, C-terminal Pfam PF03450 9.3E-29 440 545 IPR005107 CO dehydrogenase flavoprotein, C-terminal SUPERFAMILY SSF54665 6.0E-41 566 712 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Pfam PF01315 2.2E-30 604 711 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead SMART SM01008 8.8E-43 604 711 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead SUPERFAMILY SSF56003 4.2E-185 711 1336 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding Pfam PF02738 3.4E-172 719 1264 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding