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Locus name | AT2G27150 |
Alias | AAO3 | Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Hormone response pathway:Auxin | Effect for Senescence | unclear | Gene Description | aldehyde oxidase 3 (AAO3) identical to GP:3172044:gnl:PID:d1029570:AB010080 | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | Gene Ontology | | Sequence | AT2G27150.1 | Genomic | mRNA | CDS | Protein AT2G27150.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT2G27150.1 miRNA: ath-miR828 miRNA: ath-miR828 mfe: -24.8 kcal/mol p-value: 0.012046
position: 1985 target 5' A C U C G 3' UGGAG AUUCAUUUA AGCA AGA ACCUU UGAGUAAAU UCGU UCU miRNA 3' A 5'
target: AT2G27150.1 miRNA: ath-miR852 miRNA: ath-miR852 mfe: -24.8 kcal/mol p-value: 0.065379
position: 326 target 5' G U G 3' AGGG UG GGUGCUUGUCUU UCUU AU CCGCGAAUAGAA miRNA 3' G G U 5'
target: AT2G27150.2 miRNA: ath-miR828 miRNA: ath-miR828 mfe: -24.8 kcal/mol p-value: 0.014079
position: 1985 target 5' A C U C G 3' UGGAG AUUCAUUUA AGCA AGA ACCUU UGAGUAAAU UCGU UCU miRNA 3' A 5'
target: AT2G27150.2 miRNA: ath-miR852 miRNA: ath-miR852 mfe: -24.8 kcal/mol p-value: 0.076800
position: 326 target 5' G U G 3' AGGG UG GGUGCUUGUCUU UCUU AU CCGCGAAUAGAA miRNA 3' G G U 5'
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Ortholog Group | |
| Ortholog Groups: OG5_127252 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PIRSF | PIRSF000127 | 0.0 | 1 | 1329 | IPR016208 | Aldehyde oxidase/xanthine dehydrogenase | ProSiteProfiles | PS51085 | 9.9 | 1 | 88 | IPR001041 | 2Fe-2S ferredoxin-type domain | SUPERFAMILY | SSF54292 | 2.2E-20 | 1 | 89 | IPR001041 | 2Fe-2S ferredoxin-type domain | PANTHER | PTHR11908 | 0.0 | 3 | 1332 | No hit | NA | Pfam | PF00111 | 3.7E-8 | 6 | 73 | IPR001041 | 2Fe-2S ferredoxin-type domain | ProSitePatterns | PS00197 | NA | 40 | 48 | IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site | Pfam | PF01799 | 8.0E-22 | 84 | 163 | IPR002888 | [2Fe-2S]-binding | SUPERFAMILY | SSF47741 | 6.0E-32 | 96 | 206 | IPR002888 | [2Fe-2S]-binding | SUPERFAMILY | SSF56176 | 1.1E-42 | 187 | 397 | IPR016166 | FAD-binding, type 2 | ProSiteProfiles | PS51387 | 19.5 | 219 | 400 | IPR016166 | FAD-binding, type 2 | Pfam | PF00941 | 2.6E-41 | 224 | 398 | IPR002346 | Molybdopterin dehydrogenase, FAD-binding | SUPERFAMILY | SSF55447 | 3.3E-12 | 409 | 520 | IPR005107 | CO dehydrogenase flavoprotein, C-terminal | SMART | SM01092 | 1.3E-6 | 411 | 520 | IPR005107 | CO dehydrogenase flavoprotein, C-terminal | Pfam | PF03450 | 1.1E-17 | 412 | 518 | IPR005107 | CO dehydrogenase flavoprotein, C-terminal | SUPERFAMILY | SSF54665 | 1.6E-35 | 556 | 689 | IPR000674 | Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead | Pfam | PF01315 | 4.1E-31 | 579 | 688 | IPR000674 | Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead | SMART | SM01008 | 2.6E-30 | 579 | 689 | IPR000674 | Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead | SUPERFAMILY | SSF56003 | 1.4E-158 | 693 | 1317 | IPR008274 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding | Pfam | PF02738 | 3.4E-180 | 700 | 1239 | IPR008274 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding |
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| Localization | cytosol | Evidence | SUBAcon | Pubmed ID | 23180787 |
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