Basic information
Locus name	AT3G25290
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:Auxin
Effect for Senescence	unclear
Gene Description	auxin-responsive family protein similar to auxin-induced protein AIR12 GI:11357190 [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	cellular component integral to membrane
Sequence	AT3G25290.1 | Genomic | mRNA | CDS | Protein AT3G25290.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G25290.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.2 kcal/mol  p-value: 0.045607  position:  420  target 5' G                G  G 3'             GAGGCGG CGAGAGAU GA              CUUUGCU GUUCUUUG CU   miRNA  3' A       U        A  A 5'  target: AT3G25290.2  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.2 kcal/mol  p-value: 0.043748  position:  416  target 5' G                G  G 3'             GAGGCGG CGAGAGAU GA              CUUUGCU GUUCUUUG CU   miRNA  3' A       U        A  A 5'
Ortholog Group
Ortholog Groups: OG5_136176	Accession Taxon NP_001030764 ( AT3G25290 ) Arabidopsis thaliana NP_193034 Arabidopsis thaliana NP_193461 Arabidopsis thaliana NP_199564 Arabidopsis thaliana NP_566763 Arabidopsis thaliana NP_568531 Arabidopsis thaliana NP_001049254 Oryza sativa Japonica Group NP_001062286 Oryza sativa Japonica Group NP_001063579 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_04.00010195 Ostreococcus tauri fgenesh1_pg.C_Chr_09.0001000138 Ostreococcus tauri e_gw1.310.34.1 Physcomitrella patens subsp. patens e_gw1.57.29.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1910062 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_3810001 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2880014 Physcomitrella patens subsp. patens 28708.m000184 Ricinus communis 29608.m000206 Ricinus communis 29964.m000155 Ricinus communis fgenesh1_pg.C_chr_20000182 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF037471 1.5E-284 1 393 IPR017214 Uncharacterised conserved protein UCP037471 PANTHER PTHR23130 5.1E-135 23 389 No hit NA SMART SM00664 5.0E-39 47 200 IPR005018 DOMON domain ProSiteProfiles PS50836 18.4 48 168 IPR005018 DOMON domain Pfam PF04526 2.1E-32 89 195 IPR017214 Uncharacterised conserved protein UCP037471 ProSiteProfiles PS50939 35.2 184 380 IPR006593 Cytochrome b561/ferric reductase transmembrane SMART SM00665 3.7E-49 219 344 IPR006593 Cytochrome b561/ferric reductase transmembrane Pfam PF03188 1.7E-5 244 344 IPR004877 Cytochrome b561, eukaryote
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787