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| Locus name | AT4G27260 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Hormone response pathway:Auxin |
| Effect for Senescence | unclear |
| Gene Description | auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Pathway | |
| Sequence | AT4G27260.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT4G27260.1
miRNA: ath-miR156h
miRNA: ath-miR156h
mfe: -26.0 kcal/mol
p-value: 0.006675
position: 2038
target 5' U U 3'
UGUUCUUUUUUUUUUGUUA
ACGAGAGAAAGAAGACAGU
miRNA 3' C 5'
target: AT4G27260.1
miRNA: ath-miR159a
miRNA: ath-miR159a
mfe: -25.3 kcal/mol
p-value: 0.050489
position: 1953
target 5' A A G A 3'
AGAG CUCUCUUUGA CUAGA
UCUC GAGGGAAGUU GGUUU
miRNA 3' A A 5'
target: AT4G27260.1
miRNA: ath-miR159b
miRNA: ath-miR159b
mfe: -25.6 kcal/mol
p-value: 0.049972
position: 1952
target 5' G A G A 3'
AAGAG CUCUCUUUGA CUAGA
UUCUC GAGGGAAGUU GGUUU
miRNA 3' A 5'
target: AT4G27260.1
miRNA: ath-miR1888
miRNA: ath-miR1888
mfe: -20.1 kcal/mol
p-value: 0.094087
position: 2006
target 5' G U U U 3'
UCUUC C AAUCUUAAUUU
AGAAG G UUAGAAUUGAA
miRNA 3' A U U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_131781 | |
| Cross Link | |
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