Basic information
Locus name	AT5G42010
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:protein:protein interaction
Effect for Senescence	unclear
Gene Description	WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding
Sequence	AT5G42010.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_189896	Accession Taxon NP_176642 Arabidopsis thaliana NP_199016 ( AT5G42010 ) Arabidopsis thaliana NP_974089 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR14221 7.0E-206 11 709 No hit NA SMART SM00320 2.7E-8 246 285 IPR001680 WD40 repeat Pfam PF00400 4.6E-9 251 285 IPR001680 WD40 repeat SUPERFAMILY SSF50978 2.6E-51 251 288 IPR017986 WD40-repeat-containing domain ProSiteProfiles PS50082 13.9 253 294 IPR001680 WD40 repeat ProSiteProfiles PS50294 12.8 253 294 IPR017986 WD40-repeat-containing domain PRINTS PR00320 2.3E-6 272 286 IPR020472 G-protein beta WD-40 repeat ProSitePatterns PS00678 NA 272 286 IPR019775 WD40 repeat, conserved site SMART SM00320 5.0E-8 352 390 IPR001680 WD40 repeat SUPERFAMILY SSF50978 2.6E-51 353 574 IPR017986 WD40-repeat-containing domain Pfam PF00400 3.4E-7 354 389 IPR001680 WD40 repeat ProSiteProfiles PS50082 11.9 359 399 IPR001680 WD40 repeat ProSiteProfiles PS50294 21.6 359 442 IPR017986 WD40-repeat-containing domain PRINTS PR00320 2.3E-6 377 391 IPR020472 G-protein beta WD-40 repeat SMART SM00320 8.6E-12 394 433 IPR001680 WD40 repeat ProSiteProfiles PS50082 14.2 400 442 IPR001680 WD40 repeat Pfam PF00400 5.1E-9 402 433 IPR001680 WD40 repeat PRINTS PR00320 2.3E-6 420 434 IPR020472 G-protein beta WD-40 repeat SMART SM00320 10.0 435 474 IPR001680 WD40 repeat SMART SM00320 30.0 479 525 IPR001680 WD40 repeat SMART SM00320 35.0 536 571 IPR001680 WD40 repeat SMART SM00320 14.0 662 701 IPR001680 WD40 repeat SUPERFAMILY SSF50978 2.6E-51 663 701 IPR017986 WD40-repeat-containing domain