Leaf Senescence DataBase

Basic information

Locus name

AT1G67980

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others:Lignin synthesis

Effect for Senescence

unclear

Gene Description

caffeoyl-CoA 3-O-methyltransferase, putative similar to GI:2960356 [Populus balsamifera subsp. trichocarpa], GI:684942 [Medicago sativa subsp. sativa]

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

molecular function

O-methyltransferase activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT1G67980.1
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.9 kcal/mol
p-value: 0.011582

position:  835
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.1
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.9 kcal/mol
p-value: 0.011034

position:  835
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.1
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.9 kcal/mol
p-value: 0.009432

position:  835
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.1
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.9 kcal/mol
p-value: 0.011982

position:  835
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.1
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.9 kcal/mol
p-value: 0.009144

position:  835
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.1
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.9 kcal/mol
p-value: 0.011551

position:  835
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.1
miRNA: ath-miR156g
miRNA: ath-miR156g
mfe: -26.2 kcal/mol
p-value: 0.008749

position:  835
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  C 5'

target: AT1G67980.2
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.9 kcal/mol
p-value: 0.010534

position:  833
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.2
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.9 kcal/mol
p-value: 0.009912

position:  833
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.2
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.9 kcal/mol
p-value: 0.008647

position:  833
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.2
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.9 kcal/mol
p-value: 0.010909

position:  833
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.2
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.9 kcal/mol
p-value: 0.008255

position:  833
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.2
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.9 kcal/mol
p-value: 0.010510

position:  833
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  U 5'

target: AT1G67980.2
miRNA: ath-miR156g
miRNA: ath-miR156g
mfe: -26.2 kcal/mol
p-value: 0.007830

position:  833
target 5' A            A      U 3'
           UGCUCACUCUUU UCU UC
           ACGAGUGAGAGA AGA AG
miRNA  3' C                C  C 5'

Ortholog Group

Ortholog Groups: OG5_128394

Accession	Taxon
NP_173872	Arabidopsis thaliana
NP_191758	Arabidopsis thaliana
NP_191759	Arabidopsis thaliana
NP_195131	Arabidopsis thaliana
NP_564916 ( AT1G67980 )	Arabidopsis thaliana
NP_564917	Arabidopsis thaliana
127564	Chlamydomonas reinhardtii
ACO65351	Micromonas sp. RCC299
NP_001056910	Oryza sativa Japonica Group
NP_001061012	Oryza sativa Japonica Group
NP_001062142	Oryza sativa Japonica Group
NP_001062143	Oryza sativa Japonica Group
NP_001062144	Oryza sativa Japonica Group
NP_001063495	Oryza sativa Japonica Group
gw1.04.00.326.1	Ostreococcus tauri
e_gw1.16.6.1	Physcomitrella patens subsp. patens
e_gw1.201.130.1	Physcomitrella patens subsp. patens
29801.m003158	Ricinus communis
29968.m000634	Ricinus communis
30076.m004505	Ricinus communis
56393.m000022	Ricinus communis
XP_002949117	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01596	2.0E-58	8	162	IPR002935	O-methyltransferase, family 3
SUPERFAMILY	SSF53335	3.5E-26	17	162	No hit	NA
PANTHER	PTHR10509	9.6E-42	28	163	IPR002935	O-methyltransferase, family 3

Subcellular Localization

Localization

cytosol

Evidence

SUBAcon

Pubmed ID

23180787