Basic information
Locus name	AT4G34230
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Lignin synthesis
Effect for Senescence	unclear
Gene Description	cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl alcohol dehydrogenase, Nicotiana tabacum [SP|P30359], Populus deltoides, PATCHX:G288753
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process oxidation-reduction process molecular function oxidoreductase activity zinc ion binding
Sequence	AT4G34230.1 | Genomic | mRNA | CDS | Protein AT4G34230.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G34230.1  miRNA: ath-miR838 miRNA: ath-miR838 mfe: -23.3 kcal/mol  p-value: 0.023513  position:  256  target 5' C  G   U       U       G 3'             UG GCA GAAGUGG AGGGGAA              AC CGU CUUCAUC UUCUUUU   miRNA  3'    A   U                 5'  target: AT4G34230.2  miRNA: ath-miR838 miRNA: ath-miR838 mfe: -23.3 kcal/mol  p-value: 0.023620  position:  253  target 5' C  G   U       U       G 3'             UG GCA GAAGUGG AGGGGAA              AC CGU CUUCAUC UUCUUUU   miRNA  3'    A   U                 5'
Ortholog Group
Ortholog Groups: OG5_126661	Accession Taxon NP_001031788 ( AT4G34230 ) Arabidopsis thaliana NP_001031805 Arabidopsis thaliana NP_001031812 Arabidopsis thaliana NP_179765 Arabidopsis thaliana NP_179780 Arabidopsis thaliana NP_188576 Arabidopsis thaliana NP_195149 Arabidopsis thaliana NP_195510 Arabidopsis thaliana NP_195511 Arabidopsis thaliana NP_195512 Arabidopsis thaliana NP_195643 Arabidopsis thaliana CMQ301C Cyanidioschyzon merolae strain 10D 102784 Chlamydomonas reinhardtii 190503 Chlamydomonas reinhardtii 190510 Chlamydomonas reinhardtii ACO62799 Micromonas sp. RCC299 NP_001046132 Oryza sativa Japonica Group NP_001052290 Oryza sativa Japonica Group NP_001053848 Oryza sativa Japonica Group NP_001061418 Oryza sativa Japonica Group NP_001063109 Oryza sativa Japonica Group NP_001063110 Oryza sativa Japonica Group NP_001063112 Oryza sativa Japonica Group NP_001063114 Oryza sativa Japonica Group NP_001064659 Oryza sativa Japonica Group e_gw1.09.00.228.1 Ostreococcus tauri e_gw1.17.00.119.1 Ostreococcus tauri e_gw1.18.00.111.1 Ostreococcus tauri fgenesh1_pg.scaffold_163000044 Physcomitrella patens subsp. patens 27436.m000284 Ricinus communis 28109.m000042 Ricinus communis 28109.m000044 Ricinus communis 28978.m000042 Ricinus communis 29801.m003094 Ricinus communis 30170.m014270 Ricinus communis 30454.m000033 Ricinus communis XP_002952441 Volvox carteri f. nagariensis XP_002957700 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11695 4.4E-168 3 357 IPR002085 Alcohol dehydrogenase superfamily, zinc-type PANTHER PTHR11695 9.9E-168 3 357 IPR002085 Alcohol dehydrogenase superfamily, zinc-type SUPERFAMILY SSF50129 8.7E-51 16 181 IPR011032 GroES-like SUPERFAMILY SSF50129 8.7E-51 16 181 IPR011032 GroES-like SMART SM00829 2.1E-6 20 348 IPR020843 Polyketide synthase, enoylreductase SMART SM00829 2.6E-6 20 348 IPR020843 Polyketide synthase, enoylreductase Pfam PF08240 7.1E-27 34 149 IPR013154 Alcohol dehydrogenase GroES-like Pfam PF08240 7.1E-27 34 149 IPR013154 Alcohol dehydrogenase GroES-like ProSitePatterns PS00059 NA 68 82 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site ProSitePatterns PS00059 NA 68 82 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site SUPERFAMILY SSF51735 2.3E-37 155 318 No hit NA SUPERFAMILY SSF51735 1.5E-37 155 318 No hit NA Pfam PF00107 2.4E-22 191 313 IPR013149 Alcohol dehydrogenase, C-terminal Pfam PF00107 9.7E-23 191 313 IPR013149 Alcohol dehydrogenase, C-terminal
Subcellular Localization
Localization 1 Localization cytosol Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization cytosol,plasma membrane Evidence SUBAcon Pubmed ID 23180787