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Locus name | AT4G34230 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Others:Lignin synthesis | Effect for Senescence | unclear | Gene Description | cinnamyl-alcohol dehydrogenase, putative similar to cinnamyl alcohol dehydrogenase, Nicotiana tabacum [SP|P30359], Populus deltoides, PATCHX:G288753 | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | Gene Ontology | | Sequence | AT4G34230.1 | Genomic | mRNA | CDS | Protein AT4G34230.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT4G34230.1 miRNA: ath-miR838 miRNA: ath-miR838 mfe: -23.3 kcal/mol p-value: 0.023513
position: 256 target 5' C G U U G 3' UG GCA GAAGUGG AGGGGAA AC CGU CUUCAUC UUCUUUU miRNA 3' A U 5'
target: AT4G34230.2 miRNA: ath-miR838 miRNA: ath-miR838 mfe: -23.3 kcal/mol p-value: 0.023620
position: 253 target 5' C G U U G 3' UG GCA GAAGUGG AGGGGAA AC CGU CUUCAUC UUCUUUU miRNA 3' A U 5'
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Ortholog Group | |
| Ortholog Groups: OG5_126661 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR11695 | 4.4E-168 | 3 | 357 | IPR002085 | Alcohol dehydrogenase superfamily, zinc-type | PANTHER | PTHR11695 | 9.9E-168 | 3 | 357 | IPR002085 | Alcohol dehydrogenase superfamily, zinc-type | SUPERFAMILY | SSF50129 | 8.7E-51 | 16 | 181 | IPR011032 | GroES-like | SUPERFAMILY | SSF50129 | 8.7E-51 | 16 | 181 | IPR011032 | GroES-like | SMART | SM00829 | 2.1E-6 | 20 | 348 | IPR020843 | Polyketide synthase, enoylreductase | SMART | SM00829 | 2.6E-6 | 20 | 348 | IPR020843 | Polyketide synthase, enoylreductase | Pfam | PF08240 | 7.1E-27 | 34 | 149 | IPR013154 | Alcohol dehydrogenase GroES-like | Pfam | PF08240 | 7.1E-27 | 34 | 149 | IPR013154 | Alcohol dehydrogenase GroES-like | ProSitePatterns | PS00059 | NA | 68 | 82 | IPR002328 | Alcohol dehydrogenase, zinc-type, conserved site | ProSitePatterns | PS00059 | NA | 68 | 82 | IPR002328 | Alcohol dehydrogenase, zinc-type, conserved site | SUPERFAMILY | SSF51735 | 2.3E-37 | 155 | 318 | No hit | NA | SUPERFAMILY | SSF51735 | 1.5E-37 | 155 | 318 | No hit | NA | Pfam | PF00107 | 2.4E-22 | 191 | 313 | IPR013149 | Alcohol dehydrogenase, C-terminal | Pfam | PF00107 | 9.7E-23 | 191 | 313 | IPR013149 | Alcohol dehydrogenase, C-terminal |
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| Localization 1 | Localization | cytosol | Evidence | SUBAcon | Pubmed ID | 23180787 |
| Localization 2 | Localization | cytosol,plasma membrane | Evidence | SUBAcon | Pubmed ID | 23180787 |
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