Basic information
Locus name	AT4G36220
Alias	CYP84A1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Lignin synthesis
Effect for Senescence	unclear
Gene Description	cytochrome P450 84A1 (CYP84A1) / ferulate-5-hydroxylase (FAH1) identical to Cytochrome P450 84A1 (Ferulate-5-hydroxylase) (SP|Q42600) [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process oxidation-reduction process molecular function electron carrier activity heme binding iron ion binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Pathway	Reactome REACT_13433
Sequence	AT4G36220.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G36220.1  miRNA: ath-miR843 miRNA: ath-miR843 mfe: -25.6 kcal/mol  p-value: 0.031990  position:  1480  target 5' A  A             A    U 3'             CC AGUG AGCUCGAC UGAA              GG UUAC UCGAGCUG AUUU   miRNA  3' A       U        G      5'
Ortholog Group
Ortholog Groups: OG5_164595	Accession Taxon NP_195345 ( AT4G36220 ) Arabidopsis thaliana NP_196053 Arabidopsis thaliana NP_001048732 Oryza sativa Japonica Group NP_001065043 Oryza sativa Japonica Group 30131.m007121 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24298 8.3E-104 19 516 No hit NA SUPERFAMILY SSF48264 2.1E-122 32 515 IPR001128 Cytochrome P450 Pfam PF00067 1.1E-99 41 504 IPR001128 Cytochrome P450 PRINTS PR00463 1.5E-39 68 87 IPR002401 Cytochrome P450, E-class, group I PRINTS PR00463 1.5E-39 92 113 IPR002401 Cytochrome P450, E-class, group I PRINTS PR00463 1.5E-39 308 325 IPR002401 Cytochrome P450, E-class, group I PRINTS PR00385 1.4E-10 319 336 IPR001128 Cytochrome P450 PRINTS PR00463 1.5E-39 328 354 IPR002401 Cytochrome P450, E-class, group I PRINTS PR00463 1.5E-39 371 389 IPR002401 Cytochrome P450, E-class, group I PRINTS PR00385 1.4E-10 372 383 IPR001128 Cytochrome P450 PRINTS PR00463 1.5E-39 411 435 IPR002401 Cytochrome P450, E-class, group I PRINTS PR00463 1.5E-39 448 458 IPR002401 Cytochrome P450, E-class, group I PRINTS PR00385 1.4E-10 449 458 IPR001128 Cytochrome P450 ProSitePatterns PS00086 NA 451 460 IPR017972 Cytochrome P450, conserved site PRINTS PR00385 1.4E-10 458 469 IPR001128 Cytochrome P450 PRINTS PR00463 1.5E-39 458 481 IPR002401 Cytochrome P450, E-class, group I
Subcellular Localization
Localization	endoplasmic reticulum
Evidence	SUBAcon
Pubmed ID	23180787