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| Locus name | AT1G52080 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others:Structural |
| Effect for Senescence | unclear |
| Gene Description | actin binding protein family contains Prosite PS00019: Actinin-type actin-binding domain signature 1; similar to actin binding protein (GI:28071265) [Arabidopsis thaliana]; similar to A-type inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox virus] |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Sequence | AT1G52080.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
Ortholog Group  | |
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| Ortholog Groups: OG5_190842 | |
| Cross Link | |
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description | | PANTHER | PTHR31342 | 4.1E-158 | 1 | 573 | No hit | NA | | Coils | Coil | NA | 134 | 162 | No hit | NA | | Coils | Coil | NA | 189 | 217 | No hit | NA | | Coils | Coil | NA | 238 | 259 | No hit | NA | | Coils | Coil | NA | 269 | 297 | No hit | NA | | Coils | Coil | NA | 321 | 349 | No hit | NA |
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| Localization | mitochondrion,extracellular |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
