Basic information
Locus name	AT5G43900
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Structural
Effect for Senescence	unclear
Gene Description	myosin heavy chain (MYA2) nearly identical to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	cellular component myosin complex molecular function ATP binding motor activity
Sequence	AT5G43900.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G43900.1  miRNA: ath-miR1886 miRNA: ath-miR1886 mfe: -20.7 kcal/mol  p-value: 0.232416  position:  141  target 5' C  A   C             C 3'             AG AAG UGAAGUCUUUGAU              UC UUC ACUUUAGAAAUUA   miRNA  3'    A   U             A 5'  target: AT5G43900.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -27.5 kcal/mol  p-value: 0.024022  position:  2893  target 5' A                   C 3'             GAAACGGAUAAGG ACUGA              CUUUGCUUGUUCU UGACU   miRNA  3' A             U     A 5'
Ortholog Group
Ortholog Groups: OG5_126577	Accession Taxon NP_001078755 Arabidopsis thaliana NP_001154628 Arabidopsis thaliana NP_001154724 Arabidopsis thaliana NP_171912 Arabidopsis thaliana NP_171954 Arabidopsis thaliana NP_172349 Arabidopsis thaliana NP_173201 Arabidopsis thaliana NP_175453 Arabidopsis thaliana NP_175858 Arabidopsis thaliana NP_179619 Arabidopsis thaliana NP_180749 Arabidopsis thaliana NP_180882 Arabidopsis thaliana NP_188630 Arabidopsis thaliana NP_191375 Arabidopsis thaliana NP_194467 Arabidopsis thaliana NP_194600 Arabidopsis thaliana NP_195046 Arabidopsis thaliana NP_197549 Arabidopsis thaliana NP_199203 ( AT5G43900 ) Arabidopsis thaliana NP_568806 Arabidopsis thaliana 113760 Chlamydomonas reinhardtii 119317 Chlamydomonas reinhardtii 185104 Chlamydomonas reinhardtii ACO61499 Micromonas sp. RCC299 ACO63127 Micromonas sp. RCC299 NP_001048291 Oryza sativa Japonica Group NP_001048517 Oryza sativa Japonica Group NP_001050932 Oryza sativa Japonica Group NP_001051263 Oryza sativa Japonica Group NP_001051975 Oryza sativa Japonica Group NP_001057670 Oryza sativa Japonica Group NP_001059992 Oryza sativa Japonica Group NP_001064379 Oryza sativa Japonica Group NP_001064913 Oryza sativa Japonica Group gw1.06.00.17.1 Ostreococcus tauri e_gw1.104.11.1 Physcomitrella patens subsp. patens e_gw1.131.148.1 Physcomitrella patens subsp. patens e_gw1.17.29.1 Physcomitrella patens subsp. patens e_gw1.199.2.1 Physcomitrella patens subsp. patens e_gw1.228.2.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1310096 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1740065 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_66000125 Physcomitrella patens subsp. patens 29680.m001667 Ricinus communis 29739.m003628 Ricinus communis 29883.m002029 Ricinus communis 29904.m003042 Ricinus communis 29912.m005301 Ricinus communis 30027.m000814 Ricinus communis 30094.m000665 Ricinus communis 30204.m001832 Ricinus communis 30226.m002051 Ricinus communis e_gw1.11a.9.1 Thalassiosira pseudonana CCMP1335 e_gw1.14.10.1 Thalassiosira pseudonana CCMP1335 e_gw1.17.13.1 Thalassiosira pseudonana CCMP1335 e_gw1.19a.1.1 Thalassiosira pseudonana CCMP1335 e_gw1.19c.1.1 Thalassiosira pseudonana CCMP1335 e_gw1.2.25.1 Thalassiosira pseudonana CCMP1335 e_gw1.3.28.1 Thalassiosira pseudonana CCMP1335 gw1.1.52.1 Thalassiosira pseudonana CCMP1335 gw1.15.11.1 Thalassiosira pseudonana CCMP1335 gw1.3.40.1 Thalassiosira pseudonana CCMP1335 XP_002947426 Volvox carteri f. nagariensis XP_002954496 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13140 0.0 1 1052 No hit NA Pfam PF02736 2.9E-8 13 48 IPR004009 Myosin, N-terminal, SH3-like SUPERFAMILY SSF52540 8.0E-287 35 784 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00242 0.0 56 732 IPR001609 Myosin head, motor domain Pfam PF00063 2.0E-246 64 719 IPR001609 Myosin head, motor domain PRINTS PR00193 5.6E-62 92 111 IPR001609 Myosin head, motor domain PRINTS PR00193 5.6E-62 149 174 IPR001609 Myosin head, motor domain PRINTS PR00193 5.6E-62 196 223 IPR001609 Myosin head, motor domain PRINTS PR00193 5.6E-62 429 457 IPR001609 Myosin head, motor domain PRINTS PR00193 5.6E-62 482 510 IPR001609 Myosin head, motor domain SMART SM00015 33.0 733 755 IPR000048 IQ motif, EF-hand binding site Pfam PF00612 0.0 736 754 IPR000048 IQ motif, EF-hand binding site ProSiteProfiles PS50096 6.8 736 763 IPR000048 IQ motif, EF-hand binding site SMART SM00015 0.9 756 778 IPR000048 IQ motif, EF-hand binding site ProSiteProfiles PS50096 9.6 757 786 IPR000048 IQ motif, EF-hand binding site Pfam PF00612 3.1E-4 758 777 IPR000048 IQ motif, EF-hand binding site SMART SM00015 0.1 781 803 IPR000048 IQ motif, EF-hand binding site ProSiteProfiles PS50096 8.2 782 811 IPR000048 IQ motif, EF-hand binding site Pfam PF00612 0.0 784 802 IPR000048 IQ motif, EF-hand binding site SUPERFAMILY SSF52540 6.7E-16 784 882 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00015 22.0 804 826 IPR000048 IQ motif, EF-hand binding site ProSiteProfiles PS50096 8.2 805 834 IPR000048 IQ motif, EF-hand binding site Pfam PF00612 0.1 807 825 IPR000048 IQ motif, EF-hand binding site SMART SM00015 4.6E-7 829 851 IPR000048 IQ motif, EF-hand binding site ProSiteProfiles PS50096 10.1 830 859 IPR000048 IQ motif, EF-hand binding site Pfam PF00612 6.2E-7 831 851 IPR000048 IQ motif, EF-hand binding site SMART SM00015 23.0 852 874 IPR000048 IQ motif, EF-hand binding site ProSiteProfiles PS50096 7.2 853 882 IPR000048 IQ motif, EF-hand binding site Pfam PF00612 0.1 855 870 IPR000048 IQ motif, EF-hand binding site Coils Coil NA 876 911 No hit NA Coils Coil NA 915 950 No hit NA Coils Coil NA 971 999 No hit NA Coils Coil NA 1013 1048 No hit NA ProSiteProfiles PS51126 54.0 1148 1452 IPR002710 Dilute Pfam PF01843 1.3E-34 1328 1434 IPR018444 Dil domain
Subcellular Localization
Localization	cytosol,peroxisome
Evidence	SUBAcon
Pubmed ID	23180787