Basic information
Locus name	AT1G21550
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:Calcium
Effect for Senescence	unclear
Gene Description	calcium-binding protein, putative contains similarity to calcium-binding protein GB:CAB63264 GI:6580549 from [Lotus japonicus]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function calcium ion binding
Sequence	AT1G21550.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G21550.1  miRNA: ath-miR843 miRNA: ath-miR843 mfe: -26.0 kcal/mol  p-value: 0.011763  position:  225  target 5' C              A    U 3'             CCGAUGA GCUUGA CUGA              GGUUACU CGAGCU GAUU   miRNA  3' A       U      G    U 5'  target: AT1G21550.1  miRNA: ath-miR864-3p miRNA: ath-miR864-3p mfe: -22.8 kcal/mol  p-value: 0.001068  position:  506  target 5' U   G U   U            A 3'             CUU A GGU UUGUUGACUUUG              GAA U CCA AAUAACUGAAAU   miRNA  3'     G U   U              5'
Ortholog Group
Ortholog Groups: OG5_213014	Accession Taxon NP_564143 ( AT1G21550 ) Arabidopsis thaliana 29648.m001968 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10891 5.0E-102 6 155 No hit NA ProSiteProfiles PS50222 13.0 6 41 IPR002048 EF-hand domain SUPERFAMILY SSF47473 3.9E-30 9 153 No hit NA Pfam PF00036 2.1E-6 10 37 IPR002048 EF-hand domain SMART SM00054 1.4E-4 10 38 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 19 31 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 16.4 85 120 IPR002048 EF-hand domain SMART SM00054 3.7E-6 89 117 IPR002048 EF-hand domain Pfam PF13499 6.5E-11 90 152 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 98 110 IPR018247 EF-Hand 1, calcium-binding site SMART SM00054 0.0 127 155 IPR002048 EF-hand domain ProSiteProfiles PS50222 10.9 130 155 IPR002048 EF-hand domain