Leaf Senescence DataBase

Basic information

Locus name

AT2G17290

Alias

CPK6

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Signal transduction:calcium

Effect for Senescence

unclear

Gene Description

calcium-dependent protein kinase isoform 6 (CPK6) identical to calmodulin-domain protein kinase CDPK isoform 6 [Arabidopsis thaliana] gi|1399275|gb|AAB03246; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	protein phosphorylation
molecular function	ATP binding calcium ion binding protein kinase activity protein serine/threonine kinase activity

Sequence

AT2G17290.1 | Genomic | mRNA | CDS | Protein

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details


target: AT2G17290.1 miRNA: ath-miR771 miRNA: ath-miR771 mfe: -34.1 kcal/mol p-value: 0.004285 position: 345 target 5' C A U C A 3' GAGGGC AUCAUAG AGGC CG CUCCCG UGGUGUC UCCG GU miRNA 3' A A A 5'

Ortholog Group

Ortholog Groups: OG5_126600

Accession	Taxon
NP_001078576	Arabidopsis thaliana
NP_174807	Arabidopsis thaliana
NP_175485	Arabidopsis thaliana
NP_176386	Arabidopsis thaliana
NP_177612	Arabidopsis thaliana
NP_180708	Arabidopsis thaliana
NP_181133	Arabidopsis thaliana
NP_181425	Arabidopsis thaliana
NP_181717	Arabidopsis thaliana
NP_187677	Arabidopsis thaliana
NP_188676	Arabidopsis thaliana
NP_190753	Arabidopsis thaliana
NP_191312	Arabidopsis thaliana
NP_192379	Arabidopsis thaliana
NP_192380	Arabidopsis thaliana
NP_192381	Arabidopsis thaliana
NP_192383	Arabidopsis thaliana
NP_192695	Arabidopsis thaliana
NP_193925	Arabidopsis thaliana
NP_194096	Arabidopsis thaliana
NP_195257	Arabidopsis thaliana
NP_196107	Arabidopsis thaliana
NP_196779	Arabidopsis thaliana
NP_197437	Arabidopsis thaliana
NP_197446	Arabidopsis thaliana
NP_197748	Arabidopsis thaliana
NP_564066	Arabidopsis thaliana
NP_565411 ( AT2G17290 )	Arabidopsis thaliana
NP_568281	Arabidopsis thaliana
NP_680596	Arabidopsis thaliana
NP_850853	Arabidopsis thaliana
NP_973661	Arabidopsis thaliana
NP_974150	Arabidopsis thaliana
CMF051C	Cyanidioschyzon merolae strain 10D
113407	Chlamydomonas reinhardtii
123538	Chlamydomonas reinhardtii
126628	Chlamydomonas reinhardtii
127871	Chlamydomonas reinhardtii
128451	Chlamydomonas reinhardtii
182699	Chlamydomonas reinhardtii
ACO61155	Micromonas sp. RCC299
ACO69025	Micromonas sp. RCC299
NP_001043612	Oryza sativa Japonica Group
NP_001044575	Oryza sativa Japonica Group
NP_001044706	Oryza sativa Japonica Group
NP_001047767	Oryza sativa Japonica Group
NP_001048624	Oryza sativa Japonica Group
NP_001048842	Oryza sativa Japonica Group
NP_001050944	Oryza sativa Japonica Group
NP_001051503	Oryza sativa Japonica Group
NP_001051507	Oryza sativa Japonica Group
NP_001051652	Oryza sativa Japonica Group
NP_001053548	Oryza sativa Japonica Group
NP_001053670	Oryza sativa Japonica Group
NP_001055790	Oryza sativa Japonica Group
NP_001055912	Oryza sativa Japonica Group
NP_001056455	Oryza sativa Japonica Group
NP_001058943	Oryza sativa Japonica Group
NP_001059775	Oryza sativa Japonica Group
NP_001060031	Oryza sativa Japonica Group
NP_001062383	Oryza sativa Japonica Group
NP_001063657	Oryza sativa Japonica Group
NP_001065180	Oryza sativa Japonica Group
NP_001065691	Oryza sativa Japonica Group
NP_001065864	Oryza sativa Japonica Group
NP_001066266	Oryza sativa Japonica Group
NP_001066443	Oryza sativa Japonica Group
NP_001066786	Oryza sativa Japonica Group
0300010343	Ostreococcus tauri
e_gw1.166.41.1	Physcomitrella patens subsp. patens
e_gw1.2.388.1	Physcomitrella patens subsp. patens
e_gw1.49.119.1	Physcomitrella patens subsp. patens
e_gw1.7.8.1	Physcomitrella patens subsp. patens
estExt_Genewise1.C_1080010	Physcomitrella patens subsp. patens
estExt_Genewise1.C_1080018	Physcomitrella patens subsp. patens
estExt_Genewise1.C_1870029	Physcomitrella patens subsp. patens
estExt_Genewise1.C_3250028	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1930044	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_20082	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_3090051	Physcomitrella patens subsp. patens
estExt_fgenesh2_pm.C_970004	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1380079	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1870036	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2050007	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_490144	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_960145	Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_143000045	Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_232000027	Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_316000011	Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_364000031	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_364000008	Physcomitrella patens subsp. patens
27777.m000274	Ricinus communis
28308.m000065	Ricinus communis
29333.m001078	Ricinus communis
29333.m001088	Ricinus communis
29728.m000812	Ricinus communis
29761.m000421	Ricinus communis
29842.m003597	Ricinus communis
29852.m002000	Ricinus communis
29896.m000119	Ricinus communis
30100.m000791	Ricinus communis
30142.m000651	Ricinus communis
30147.m014057	Ricinus communis
30169.m006442	Ricinus communis
30170.m014282	Ricinus communis
30190.m011343	Ricinus communis
estExt_fgenesh1_pg.C_chr_90337	Thalassiosira pseudonana CCMP1335
fgenesh1_pm.C_chr_17000006	Thalassiosira pseudonana CCMP1335
gw1.5.358.1	Thalassiosira pseudonana CCMP1335
gw1.9.124.1	Thalassiosira pseudonana CCMP1335
XP_002947329	Volvox carteri f. nagariensis
XP_002949115	Volvox carteri f. nagariensis
XP_002949744	Volvox carteri f. nagariensis
XP_002952569	Volvox carteri f. nagariensis
XP_002953259	Volvox carteri f. nagariensis
XP_002953298	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SUPERFAMILY	SSF56112	1.8E-84	66	367	IPR011009	Protein kinase-like domain
PANTHER	PTHR24349	1.1E-248	73	543	No hit	NA
Pfam	PF00069	1.9E-67	85	343	IPR000719	Protein kinase, catalytic domain
ProSiteProfiles	PS50011	47.1	85	343	IPR000719	Protein kinase, catalytic domain
SMART	SM00220	7.8E-96	85	343	IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain
ProSitePatterns	PS00107	NA	91	114	IPR017441	Protein kinase, ATP binding site
ProSitePatterns	PS00108	NA	205	217	IPR008271	Serine/threonine-protein kinase, active site
SUPERFAMILY	SSF47473	2.5E-47	383	523	No hit	NA
ProSiteProfiles	PS50222	14.8	386	421	IPR002048	EF-hand domain
SMART	SM00054	1.8E-4	390	418	IPR002048	EF-hand domain
Pfam	PF13499	1.4E-12	391	450	IPR011992	EF-hand-like domain
ProSitePatterns	PS00018	NA	399	411	IPR018247	EF-Hand 1, calcium-binding site
ProSiteProfiles	PS50222	11.3	422	457	IPR002048	EF-hand domain
SMART	SM00054	4.0E-4	426	454	IPR002048	EF-hand domain
ProSitePatterns	PS00018	NA	435	447	IPR018247	EF-Hand 1, calcium-binding site
ProSiteProfiles	PS50222	14.0	458	493	IPR002048	EF-hand domain
SMART	SM00054	0.8	462	490	IPR002048	EF-hand domain
Pfam	PF13499	5.7E-15	465	521	IPR011992	EF-hand-like domain
ProSitePatterns	PS00018	NA	471	483	IPR018247	EF-Hand 1, calcium-binding site
SMART	SM00054	2.8E-6	496	524	IPR002048	EF-hand domain
ProSiteProfiles	PS50222	12.8	497	527	IPR002048	EF-hand domain
ProSitePatterns	PS00018	NA	505	517	IPR018247	EF-Hand 1, calcium-binding site

Subcellular Localization

Localization

cytosol

Evidence

SUBAcon

Pubmed ID

23180787