|
|
| Locus name | AT2G38800 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Signal transduction:Calcium |
| Effect for Senescence | unclear |
| Gene Description | calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G38800.1 | Genomic | mRNA | CDS | Protein
|
|
| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
|
| Details | | target: AT2G38800.1
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -33.2 kcal/mol
p-value: 0.000178
position: 101
target 5' A A 3'
GAUGAUGAUGAUGAAGA GA
CUGCUACUACUACUUCU CU
miRNA 3' A A 5'
target: AT2G38800.1
miRNA: ath-miR826
miRNA: ath-miR826
mfe: -25.1 kcal/mol
p-value: 0.057489
position: 1405
target 5' G G A A A 3'
A GUGUCU AAGGCC GACUG
U CAUAGG UUUUGG CUGAU
miRNA 3' G G C 5'
target: AT2G38800.1
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.0 kcal/mol
p-value: 0.113417
position: 1604
target 5' C U U A 3'
UG AAUGGAUGAGGA GCUGA
AC UUGCUUGUUCUU UGACU
miRNA 3' U A 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_164489 | |
| Cross Link | |
|
|
