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Locus name | AT2G02710 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Signal transduction |
Effect for Senescence | unclear |
Gene Description | PAC motif-containing protein similar to nonphototropic hypocotyl 1 [Zea mays] GI:2687358; contains Pfam profile PF00785: PAC motif |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT2G02710.1 | Genomic | mRNA | CDS | Protein AT2G02710.2 | Genomic | mRNA | CDS | Protein AT2G02710.3 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT2G02710.1 miRNA: ath-miR841 miRNA: ath-miR841 mfe: -24.6 kcal/mol p-value: 0.019257
position: 557 target 5' A G A U 3' UCAG U CAAGUG GCUUGU AGUC A GUUCAC CGAGCA miRNA 3' A A A U 5'
target: AT2G02710.1 miRNA: ath-miR854a miRNA: ath-miR854a mfe: -28.4 kcal/mol p-value: 0.016911
position: 48 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.1 miRNA: ath-miR854b miRNA: ath-miR854b mfe: -28.4 kcal/mol p-value: 0.017938
position: 48 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.1 miRNA: ath-miR854c miRNA: ath-miR854c mfe: -28.4 kcal/mol p-value: 0.016613
position: 48 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.1 miRNA: ath-miR854d miRNA: ath-miR854d mfe: -28.4 kcal/mol p-value: 0.018103
position: 48 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.1 miRNA: ath-miR854e miRNA: ath-miR854e mfe: -28.4 kcal/mol p-value: 0.018672
position: 48 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.2 miRNA: ath-miR841 miRNA: ath-miR841 mfe: -24.6 kcal/mol p-value: 0.021181
position: 699 target 5' A G A U 3' UCAG U CAAGUG GCUUGU AGUC A GUUCAC CGAGCA miRNA 3' A A A U 5'
target: AT2G02710.2 miRNA: ath-miR854a miRNA: ath-miR854a mfe: -28.4 kcal/mol p-value: 0.018683
position: 190 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.2 miRNA: ath-miR854b miRNA: ath-miR854b mfe: -28.4 kcal/mol p-value: 0.019531
position: 190 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.2 miRNA: ath-miR854c miRNA: ath-miR854c mfe: -28.4 kcal/mol p-value: 0.018304
position: 190 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.2 miRNA: ath-miR854d miRNA: ath-miR854d mfe: -28.4 kcal/mol p-value: 0.020059
position: 190 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.2 miRNA: ath-miR854e miRNA: ath-miR854e mfe: -28.4 kcal/mol p-value: 0.020373
position: 190 target 5' U G C 3' CUCCUCU UCUUAUCUUC UC GAGGAGG GGGAUAGGAG AG miRNA 3' A U 5'
target: AT2G02710.3 miRNA: ath-miR841 miRNA: ath-miR841 mfe: -24.6 kcal/mol p-value: 0.018272
position: 502 target 5' A G A U 3' UCAG U CAAGUG GCUUGU AGUC A GUUCAC CGAGCA miRNA 3' A A A U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_138569 | |
Cross Link | |
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