Basic information
Locus name	AT1G54130
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	RelA/SpoT protein, putative (RSH3) identical to RSH3 (RelA/SpoT homolog) GI:7141308 from [Arabidopsis thaliana]; contains Pfam profiles PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process guanosine tetraphosphate metabolic process molecular function catalytic activity
Sequence	AT1G54130.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_139258	Accession Taxon NP_188021 Arabidopsis thaliana NP_564652 ( AT1G54130 ) Arabidopsis thaliana CMK147C Cyanidioschyzon merolae strain 10D 138526 Chlamydomonas reinhardtii ACO66334 Micromonas sp. RCC299 NP_001060253 Oryza sativa Japonica Group NP_001061969 Oryza sativa Japonica Group NP_001063291 Oryza sativa Japonica Group e_gw1.02.00.146.1 Ostreococcus tauri e_gw1.240.52.1 Physcomitrella patens subsp. patens e_gw1.240.61.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_150229 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_4400001 Physcomitrella patens subsp. patens 29706.m001275 Ricinus communis XP_002958643 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21262 1.2E-201 99 706 IPR026020 (p)ppGpp synthetase SUPERFAMILY SSF109604 7.4E-60 195 388 No hit NA Pfam PF13328 1.1E-42 219 372 No hit NA SMART SM00471 8.3E-8 233 350 IPR003607 HD/PDEase domain SUPERFAMILY SSF81301 1.8E-56 378 573 No hit NA Pfam PF04607 5.1E-37 431 540 IPR007685 RelA/SpoT SMART SM00954 4.1E-59 431 541 IPR007685 RelA/SpoT
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787