Basic information
Locus name	AT5G23750
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	remorin family protein contains Pfam domain, PF03766: Remorin, N-terminal region; contains Pfam domain, PF03763: Remorin, C-terminal region
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Sequence	AT5G23750.1 | Genomic | mRNA | CDS | Protein AT5G23750.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G23750.1  miRNA: ath-miR159a miRNA: ath-miR159a mfe: -25.9 kcal/mol  p-value: 0.017573  position:  506  target 5' A  A              G  U 3'             AG AGCUUUCUUCAAUU GA              UC UCGAGGGAAGUUAG UU   miRNA  3' A                 G  U 5'  target: AT5G23750.1  miRNA: ath-miR159b miRNA: ath-miR159b mfe: -26.2 kcal/mol  p-value: 0.016111  position:  505  target 5' G   A              G  U 3'             AAG AGCUUUCUUCAAUU GA              UUC UCGAGGGAAGUUAG UU   miRNA  3'                    G  U 5'  target: AT5G23750.2  miRNA: ath-miR159a miRNA: ath-miR159a mfe: -25.9 kcal/mol  p-value: 0.017358  position:  495  target 5' A  A              G  U 3'             AG AGCUUUCUUCAAUU GA              UC UCGAGGGAAGUUAG UU   miRNA  3' A                 G  U 5'  target: AT5G23750.2  miRNA: ath-miR159b miRNA: ath-miR159b mfe: -26.2 kcal/mol  p-value: 0.015899  position:  494  target 5' G   A              G  U 3'             AAG AGCUUUCUUCAAUU GA              UUC UCGAGGGAAGUUAG UU   miRNA  3'                    G  U 5'
Ortholog Group
Ortholog Groups: OG5_150296	Accession Taxon NP_182106 Arabidopsis thaliana NP_191685 Arabidopsis thaliana NP_197764 ( AT5G23750 ) Arabidopsis thaliana NP_974824 Arabidopsis thaliana NP_001053409 Oryza sativa Japonica Group e_gw1.246.66.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_20040 Physcomitrella patens subsp. patens gw1.11.151.1 Physcomitrella patens subsp. patens 30147.m013748 Ricinus communis 30174.m009002 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31775 1.1E-80 2 202 No hit NA Pfam PF03766 1.5E-7 29 88 IPR005518 Remorin, N-terminal Pfam PF03763 6.9E-36 91 199 IPR005516 Remorin, C-terminal Coils Coil NA 127 170 No hit NA
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787