|
|
| Locus name | AT1G22930 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Signal transduction |
| Effect for Senescence | unclear |
| Gene Description | T-complex protein 11 contains Pfam PF05794: T-complex protein 11 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Sequence | AT1G22930.1 | Genomic | mRNA | CDS | Protein
AT1G22930.2 | Genomic | mRNA | CDS | Protein
|
|
| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
|
| Details | | target: AT1G22930.1
miRNA: ath-miR779
miRNA: ath-miR779
mfe: -25.0 kcal/mol
p-value: 0.014190
position: 2123
target 5' U G A G 3'
GU GACGAGGUUUC AAUCA
CA UUGCUUUAAAG UUAGU
miRNA 3' U G G 5'
target: AT1G22930.2
miRNA: ath-miR779
miRNA: ath-miR779
mfe: -25.0 kcal/mol
p-value: 0.012888
position: 1849
target 5' U G A G 3'
GU GACGAGGUUUC AAUCA
CA UUGCUUUAAAG UUAGU
miRNA 3' U G G 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_141021 | |
| Cross Link | |
|
|
