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| Locus name | AT3G17810 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nucleic acid degradation |
| Effect for Senescence | unclear |
| Gene Description | dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein low similarity to SP|Q12882 Dihydropyrimidine dehydrogenase [NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) {Homo sapiens}; contains Pfam profile PF01180: Dihydroorotate dehydrogenase |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Pathway | |
| Sequence | AT3G17810.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT3G17810.1
miRNA: ath-miR170
miRNA: ath-miR170
mfe: -24.2 kcal/mol
p-value: 0.047906
position: 1209
target 5' U A A U 3'
GAUG UG CACGGCU UGGUCA
CUAU AC GUGCCGA GUUAGU
miRNA 3' A U 5'
target: AT3G17810.1
miRNA: ath-miR835-3p
miRNA: ath-miR835-3p
mfe: -28.0 kcal/mol
p-value: 0.001558
position: 84
target 5' A G G U 3'
CUUU UUGCGUGUC UCUUC
GAAA AACGCAUAG AGAGG
miRNA 3' G A U 5'
target: AT3G17810.1
miRNA: ath-miR846
miRNA: ath-miR846
mfe: -20.7 kcal/mol
p-value: 0.079901
position: 1507
target 5' A A C 3'
GGUUC AGC ACUUCA UUCA
UUAAG UCG UGAAGU AAGU
miRNA 3' U U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_129390 | | Accession | Taxon | | NP_188408 ( AT3G17810 ) | Arabidopsis thaliana |
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