Basic information
Locus name	AT5G04980
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation
Effect for Senescence	unclear
Gene Description	endonuclease/exonuclease/phosphatase family protein contains similarity to inositol polyphosphate 5-phosphatase I (GI:10444261) and II (GI:10444263) [Arabidopsis thaliana]; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process phosphatidylinositol dephosphorylation
Sequence	AT5G04980.1 | Genomic | mRNA | CDS | Protein AT5G04980.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G04980.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -36.1 kcal/mol  p-value: 0.000021  position:  603  target 5' A                  C  G 3'             UGACGAUGAUGAUGAAGA GA              ACUGCUACUACUACUUCU CU   miRNA  3'                    A    5'  target: AT5G04980.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -36.1 kcal/mol  p-value: 0.000023  position:  672  target 5' A                  C  G 3'             UGACGAUGAUGAUGAAGA GA              ACUGCUACUACUACUUCU CU   miRNA  3'                    A    5'
Ortholog Group
Ortholog Groups: OG5_177344	Accession Taxon NP_001078529 ( AT5G04980 ) Arabidopsis thaliana NP_196117 Arabidopsis thaliana NP_001055889 Oryza sativa Japonica Group 29751.m001809 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11200 6.9E-174 5 427 No hit NA SUPERFAMILY SSF56219 4.5E-11 6 112 IPR005135 Endonuclease/exonuclease/phosphatase Pfam PF03372 4.9E-26 14 414 IPR005135 Endonuclease/exonuclease/phosphatase SMART SM00128 1.1E-48 120 429 IPR000300 Inositol polyphosphate-related phosphatase SUPERFAMILY SSF56219 2.0E-58 188 426 IPR005135 Endonuclease/exonuclease/phosphatase