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| Locus name | AT5G26940 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nucleic acid degradation |
| Effect for Senescence | unclear |
| Gene Description | exonuclease family protein contains exonuclease domain, Pfam:PF00929 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G26940.1 | Genomic | mRNA | CDS | Protein
AT5G26940.2 | Genomic | mRNA | CDS | Protein
AT5G26940.3 | Genomic | mRNA | CDS | Protein
AT5G26940.4 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G26940.1
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.1 kcal/mol
p-value: 0.063099
position: 104
target 5' A G U G 3'
GAGA GAGCGAGA GA CUGAU
CUUU CUUGUUCU UU GACUA
miRNA 3' A G 5'
target: AT5G26940.2
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.1 kcal/mol
p-value: 0.091610
position: 643
target 5' A G U G 3'
GAGA GAGCGAGA GA CUGAU
CUUU CUUGUUCU UU GACUA
miRNA 3' A G 5'
target: AT5G26940.3
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.1 kcal/mol
p-value: 0.065465
position: 126
target 5' A G U G 3'
GAGA GAGCGAGA GA CUGAU
CUUU CUUGUUCU UU GACUA
miRNA 3' A G 5'
target: AT5G26940.4
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -22.1 kcal/mol
p-value: 0.067489
position: 184
target 5' A G U G 3'
GAGA GAGCGAGA GA CUGAU
CUUU CUUGUUCU UU GACUA
miRNA 3' A G 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_136918 | |
| Cross Link | |
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