Basic information
Locus name	AT3G52780
Alias	PAP20
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation
Effect for Senescence	unclear
Gene Description	purple acid phosphatase (PAP20) identical to purple acid phosphatase GI:20257491 from [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function acid phosphatase activity hydrolase activity metal ion binding
Sequence	AT3G52780.1 | Genomic | mRNA | CDS | Protein AT3G52780.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G52780.1  miRNA: ath-miR170 miRNA: ath-miR170 mfe: -24.3 kcal/mol  p-value: 0.038870  position:  208  target 5' A      U       A     U 3'             GUGUUG AUAUGGC CAGUC              UAUAAC UGUGCCG GUUAG   miRNA  3' C              A     U 5'  target: AT3G52780.1  miRNA: ath-miR826 miRNA: ath-miR826 mfe: -25.4 kcal/mol  p-value: 0.031479  position:  477  target 5' A              G      U 3'             CAUGUAUC AAAAU GGAUUA              GUGCAUAG UUUUG CCUGAU   miRNA  3'          G     G        5'  target: AT3G52780.2  miRNA: ath-miR170 miRNA: ath-miR170 mfe: -24.3 kcal/mol  p-value: 0.038925  position:  208  target 5' A      U       A     U 3'             GUGUUG AUAUGGC CAGUC              UAUAAC UGUGCCG GUUAG   miRNA  3' C              A     U 5'  target: AT3G52780.2  miRNA: ath-miR826 miRNA: ath-miR826 mfe: -25.4 kcal/mol  p-value: 0.031537  position:  477  target 5' A              G      U 3'             CAUGUAUC AAAAU GGAUUA              GUGCAUAG UUUUG CCUGAU   miRNA  3'          G     G        5'
Ortholog Group
Ortholog Groups: OG5_128526	Accession Taxon NP_188686 Arabidopsis thaliana NP_190846 ( AT3G52780 ) Arabidopsis thaliana NP_850686 Arabidopsis thaliana CME135C Cyanidioschyzon merolae strain 10D CMG168C Cyanidioschyzon merolae strain 10D CMR114C Cyanidioschyzon merolae strain 10D ACO61826 Micromonas sp. RCC299 ACO65914 Micromonas sp. RCC299 ACO66136 Micromonas sp. RCC299 NP_001050513 Oryza sativa Japonica Group NP_001065770 Oryza sativa Japonica Group NP_001066169 Oryza sativa Japonica Group gw1.05.00.203.1 Ostreococcus tauri e_gw1.10.268.1 Physcomitrella patens subsp. patens e_gw1.291.54.1 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_1340047 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_490200 Physcomitrella patens subsp. patens 29625.m000688 Ricinus communis 29666.m001449 Ricinus communis thaps1_ua_kg.chr_3000072 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22953 3.6E-150 1 418 No hit NA SUPERFAMILY SSF49363 2.2E-28 39 135 IPR008963 Purple acid phosphatase-like, N-terminal SUPERFAMILY SSF56300 1.7E-55 139 407 No hit NA Pfam PF00149 5.0E-19 141 334 IPR004843 Metallophosphoesterase domain Pfam PF14008 2.1E-16 349 407 IPR025733 Iron/zinc purple acid phosphatase-like C-terminal domain
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787