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Locus name | AT3G51440 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Others:Alkaloid biosynthesis |
Effect for Senescence | unclear |
Gene Description | strictosidine synthase family protein similar to hemomucin [Drosophila melanogaster][GI:1280434], strictosidine synthase [Rauvolfia serpentina][SP|P15324]; contains strictosidine synthase domain PF03088 |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT3G51440.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT3G51440.1 miRNA: ath-miR157d miRNA: ath-miR157d mfe: -28.7 kcal/mol p-value: 0.001775
position: 691 target 5' G U C A A 3' GUG CUCUCUGUCU CUG UCA CAC GAGAGAUAGA GAC AGU miRNA 3' A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_146400 | |
Cross Link | |
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Localization | endoplasmic reticulum |
Evidence | SUBAcon |
Pubmed ID | 23180787 |