|
|
| Locus name | AT3G59950 |
| Alias | ATG4B |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling:chloroplast protein degradation |
| Effect for Senescence | delay |
| Gene Description | chloroplast protein degradation |
| Evidence | Genetic evidence:Mutant [Ref 1] |
| References | 1: Wada S, Ishida H, Izumi M, Yoshimoto K, Ohsumi Y, Mae T, Makino AAutophagy plays a role in chloroplast degradation during senescence in individually darkened leaves.Plant Physiol. 2009 Feb;149(2):885-93 |
| Sequence | AT3G59950.1 | Genomic | mRNA | CDS | Protein
AT3G59950.2 | Genomic | mRNA | CDS | Protein
AT3G59950.3 | Genomic | mRNA | CDS | Protein
|
|
| Mutant name |
atg4a4b-1 |
| Mutant/Transgenic |
mutant |
| Ecotype |
Col-0 |
| Mutagenesis type |
T-DNA insertion_knock out |
miRNA Interaction  | |
|
| Details | | target: AT3G59950.1
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -21.5 kcal/mol
p-value: 0.134882
position: 1564
target 5' A C G U 3'
AAG UA CCGGAGA CUCUAA
UUC AU GGUCUUU GAGAUU
miRNA 3' A A U 5'
target: AT3G59950.2
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -21.5 kcal/mol
p-value: 0.156100
position: 1887
target 5' A C G U 3'
AAG UA CCGGAGA CUCUAA
UUC AU GGUCUUU GAGAUU
miRNA 3' A A U 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_127111 | |
| Cross Link | |
|
|
| Mutant Image | |
|
| atg4b mutant exhibited early senescence phenotype compared with wild type Col-0 (7-week-old). | |
|
 |
|
| Localization 1 | | Localization | cytosol | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
|
| Localization 2 | | Localization | mitochondrion | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
|
