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Locus name | AT5G52640 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Others:stress and detoxification | Effect for Senescence | unclear | Gene Description | heat shock protein 81-1 (HSP81-1) / heat shock protein 83 (HSP83) nearly identical to SP|P27323 Heat shock protein 81-1 (HSP81-1) (Heat shock protein 83) {Arabidopsis thaliana}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | Gene Ontology | | Sequence | AT5G52640.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT5G52640.1 miRNA: ath-miR171b miRNA: ath-miR171b mfe: -29.1 kcal/mol p-value: 0.006760
position: 399 target 5' A A A 3' GUGGUAUUGGCAUG C CAA CACUAUAACCGUGC G GUU miRNA 3' G C A 5'
target: AT5G52640.1 miRNA: ath-miR171c miRNA: ath-miR171c mfe: -29.1 kcal/mol p-value: 0.006017
position: 399 target 5' A A A 3' GUGGUAUUGGCAUG C CAA CACUAUAACCGUGC G GUU miRNA 3' G C A 5'
target: AT5G52640.1 miRNA: ath-miR780 miRNA: ath-miR780 mfe: -23.3 kcal/mol p-value: 0.055165
position: 2131 target 5' C U 3' UGCUAGG AUUCAC AGGA ACGGUCU UAAGUG UUCU miRNA 3' U A C U 5'
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Ortholog Group | |
| Ortholog Groups: OG5_126623 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | Hamap | MF_00505 | 27.3 | 7 | 671 | IPR001404 | Heat shock protein Hsp90 | PANTHER | PTHR11528 | 0.0 | 8 | 705 | IPR001404 | Heat shock protein Hsp90 | PIRSF | PIRSF002583 | 0.0 | 8 | 700 | IPR001404 | Heat shock protein Hsp90 | PRINTS | PR00775 | 1.1E-83 | 10 | 30 | IPR020575 | Heat shock protein Hsp90, N-terminal | SUPERFAMILY | SSF55874 | 1.8E-75 | 10 | 218 | IPR003594 | Histidine kinase-like ATPase, ATP-binding domain | ProSitePatterns | PS00298 | NA | 30 | 39 | IPR019805 | Heat shock protein Hsp90, conserved site | PRINTS | PR00775 | 1.1E-83 | 31 | 53 | IPR020575 | Heat shock protein Hsp90, N-terminal | SMART | SM00387 | 1.4E-10 | 32 | 187 | IPR003594 | Histidine kinase-like ATPase, ATP-binding domain | Pfam | PF02518 | 4.9E-11 | 34 | 184 | IPR003594 | Histidine kinase-like ATPase, ATP-binding domain | PRINTS | PR00775 | 1.1E-83 | 80 | 97 | IPR020575 | Heat shock protein Hsp90, N-terminal | PRINTS | PR00775 | 1.1E-83 | 98 | 115 | IPR020575 | Heat shock protein Hsp90, N-terminal | PRINTS | PR00775 | 1.1E-83 | 123 | 145 | IPR020575 | Heat shock protein Hsp90, N-terminal | PRINTS | PR00775 | 1.1E-83 | 175 | 192 | IPR020575 | Heat shock protein Hsp90, N-terminal | Pfam | PF00183 | 4.1E-265 | 189 | 705 | IPR001404 | Heat shock protein Hsp90 | PRINTS | PR00775 | 1.1E-83 | 193 | 211 | IPR020575 | Heat shock protein Hsp90, N-terminal | SUPERFAMILY | SSF54211 | 3.1E-109 | 269 | 524 | IPR020568 | Ribosomal protein S5 domain 2-type fold | Coils | Coil | NA | 523 | 550 | No hit | NA | SUPERFAMILY | SSF110942 | 1.8E-38 | 548 | 670 | No hit | NA |
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| Localization | cytosol | Evidence | SUBAcon | Pubmed ID | 23180787 |
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