Leaf Senescence DataBase

Basic information

Locus name

AT1G02890

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others:ATPases

Effect for Senescence

unclear

Gene Description

AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family; similar to mitochondrial sorting protein 1 (MSP1) (TAT-binding homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

molecular function

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT1G02890.1
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.6 kcal/mol
p-value: 0.058086

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.1
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.6 kcal/mol
p-value: 0.068159

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.1
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.6 kcal/mol
p-value: 0.041536

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.1
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.6 kcal/mol
p-value: 0.059036

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.1
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.6 kcal/mol
p-value: 0.052116

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.1
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.6 kcal/mol
p-value: 0.057516

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.2
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.6 kcal/mol
p-value: 0.057028

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.2
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.6 kcal/mol
p-value: 0.066764

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.2
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.6 kcal/mol
p-value: 0.040837

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.2
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.6 kcal/mol
p-value: 0.057972

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.2
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.6 kcal/mol
p-value: 0.051091

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

target: AT1G02890.2
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.6 kcal/mol
p-value: 0.056473

position:  1671
target 5' U    G       C      C 3'
           UGUU ACUCUCU UUGUUA
           ACGA UGAGAGA GACAGU
miRNA  3' C    G       A        5'

Ortholog Group

Ortholog Groups: OG5_137747

Accession	Taxon
NP_001117220	Arabidopsis thaliana
NP_171788 ( AT1G02890 )	Arabidopsis thaliana
NP_176404	Arabidopsis thaliana
NP_194217	Arabidopsis thaliana
NP_567238	Arabidopsis thaliana
NP_001050084	Oryza sativa Japonica Group
NP_001060602	Oryza sativa Japonica Group
e_gw1.3.162.1	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_27000013	Physcomitrella patens subsp. patens
29986.m001585	Ricinus communis
30147.m014522	Ricinus communis
XP_002954598	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SUPERFAMILY	SSF49879	2.8E-9	123	226	IPR008984	SMAD/FHA domain
PANTHER	PTHR23074	0.0	428	1252	No hit	NA
SUPERFAMILY	SSF52540	1.1E-58	947	1222	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00382	3.4E-19	984	1121	IPR003593	AAA+ ATPase domain
Pfam	PF00004	1.4E-36	988	1117	IPR003959	ATPase, AAA-type, core
ProSitePatterns	PS00674	NA	1091	1110	IPR003960	ATPase, AAA-type, conserved site

Subcellular Localization

Localization

cytosol

Evidence

SUBAcon

Pubmed ID

23180787