Basic information
Locus name	AT3G47950
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:ATPase
Effect for Senescence	unclear
Gene Description	ATPase, plasma membrane-type, putative / proton pump, putative strong similarity to P-type H(+)-transporting ATPase from Nicotiana plumbaginifolia [SP|Q08435, SP|Q08436], Lycopersicon esculentum [GI:5901757, SP|P22180], Solanum tuberosum [GI:435003]; contains InterPro accession IPR001757: ATPase, E1-E2 type
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process cation transport cellular component integral to membrane molecular function cation-transporting ATPase activity
Pathway	KEGG map00190 (EC 3.6.3.6)
Sequence	AT3G47950.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G47950.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -24.7 kcal/mol  p-value: 0.020978  position:  1916  target 5' A    G          U A    U 3'             UGAC GGUGAUGGUG A AUGA              ACUG CUACUACUAC U UACU   miRNA  3'                 U C      5'  target: AT3G47950.1  miRNA: ath-miR419 miRNA: ath-miR419 mfe: -23.5 kcal/mol  p-value: 0.078721  position:  1583  target 5' G  G          A       G 3'             GA GUCCUUGGCA UUUGUGG              UU UAGGAGUCGU AAGUAUU   miRNA  3' G  G                    5'
Ortholog Group
Ortholog Groups: OG5_127253	Accession Taxon NP_173169 Arabidopsis thaliana NP_178181 Arabidopsis thaliana NP_178762 Arabidopsis thaliana NP_179486 Arabidopsis thaliana NP_180028 Arabidopsis thaliana NP_189850 Arabidopsis thaliana NP_190378 ( AT3G47950 ) Arabidopsis thaliana NP_191592 Arabidopsis thaliana NP_192910 Arabidopsis thaliana NP_194748 Arabidopsis thaliana NP_200545 Arabidopsis thaliana NP_201073 Arabidopsis thaliana CMQ247C Cyanidioschyzon merolae strain 10D 182602 Chlamydomonas reinhardtii 38137 Chlamydomonas reinhardtii 54949 Chlamydomonas reinhardtii ACO63095 Micromonas sp. RCC299 NP_001048395 Oryza sativa Japonica Group NP_001048647 Oryza sativa Japonica Group NP_001049185 Oryza sativa Japonica Group NP_001050947 Oryza sativa Japonica Group NP_001054118 Oryza sativa Japonica Group NP_001055186 Oryza sativa Japonica Group NP_001056980 Oryza sativa Japonica Group NP_001059093 Oryza sativa Japonica Group NP_001061339 Oryza sativa Japonica Group NP_001067382 Oryza sativa Japonica Group gw1.06.00.30.1 Ostreococcus tauri e_gw1.404.27.1 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_1370088 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3210018 Physcomitrella patens subsp. patens 27401.m000290 Ricinus communis 29588.m000874 Ricinus communis 29737.m001242 Ricinus communis 29810.m000144 Ricinus communis 29822.m003460 Ricinus communis 29848.m004445 Ricinus communis 29884.m000180 Ricinus communis 30147.m014059 Ricinus communis 30174.m008765 Ricinus communis 30182.m000136 Ricinus communis fgenesh1_pg.C_chr_7000651 Thalassiosira pseudonana CCMP1335 XP_002947352 Volvox carteri f. nagariensis XP_002951653 Volvox carteri f. nagariensis XP_002951750 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24093 0.0 6 893 IPR001757 Cation-transporting P-type ATPase SMART SM00831 1.9E-21 21 93 IPR004014 Cation-transporting P-type ATPase, N-terminal SUPERFAMILY SSF81665 3.0E-87 21 138 No hit NA Pfam PF00690 1.4E-13 24 87 IPR004014 Cation-transporting P-type ATPase, N-terminal TIGRFAM TIGR01647 0.0 40 816 IPR006534 H+ transporting P-type ATPase, subfamily IIIA Pfam PF00122 1.0E-56 106 327 IPR008250 P-type ATPase, A domain TIGRFAM TIGR01494 1.9E-37 107 354 IPR001757 Cation-transporting P-type ATPase SUPERFAMILY SSF81653 2.2E-28 138 235 No hit NA PRINTS PR00119 1.6E-42 185 199 IPR001757 Cation-transporting P-type ATPase SUPERFAMILY SSF81665 3.0E-87 235 329 No hit NA Pfam PF00702 1.6E-23 331 608 IPR023214 HAD-like domain SUPERFAMILY SSF56784 1.1E-37 331 387 IPR023214 HAD-like domain PRINTS PR00119 1.6E-42 335 349 IPR001757 Cation-transporting P-type ATPase ProSitePatterns PS00154 NA 337 343 IPR018303 P-type ATPase, phosphorylation site SUPERFAMILY SSF56784 1.1E-37 416 641 IPR023214 HAD-like domain PRINTS PR00120 3.4E-60 451 469 IPR001757 Cation-transporting P-type ATPase PRINTS PR00119 1.6E-42 489 500 IPR001757 Cation-transporting P-type ATPase PRINTS PR00119 1.6E-42 511 521 IPR001757 Cation-transporting P-type ATPase PRINTS PR00120 3.4E-60 566 582 IPR001757 Cation-transporting P-type ATPase TIGRFAM TIGR01494 4.7E-28 569 683 IPR001757 Cation-transporting P-type ATPase PRINTS PR00119 1.6E-42 594 613 IPR001757 Cation-transporting P-type ATPase PRINTS PR00120 3.4E-60 594 610 IPR001757 Cation-transporting P-type ATPase PRINTS PR00119 1.6E-42 617 629 IPR001757 Cation-transporting P-type ATPase PRINTS PR00120 3.4E-60 625 650 IPR001757 Cation-transporting P-type ATPase SUPERFAMILY SSF81665 3.0E-87 643 857 No hit NA PRINTS PR00120 3.4E-60 770 791 IPR001757 Cation-transporting P-type ATPase Coils Coil NA 911 932 No hit NA
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787