Basic information
Locus name	AT1G09240
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Metal binding
Effect for Senescence	unclear
Gene Description	nicotianamine synthase, putative similar to nicotianamine synthase [Lycopersicon esculentum][GI:4753801], nicotianamine synthase 2 [Hordeum vulgare][GI:4894912]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process nicotianamine biosynthetic process molecular function nicotianamine synthase activity
Pathway	MetaCyc PWY-5957
Sequence	AT1G09240.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G09240.1  miRNA: ath-miR159b miRNA: ath-miR159b mfe: -25.0 kcal/mol  p-value: 0.035700  position:  779  target 5' C      G              U 3'             GAGAGC UUUCUUUA UCCGA              UUCUCG AGGGAAGU AGGUU   miRNA  3'                 U     U 5'  target: AT1G09240.1  miRNA: ath-miR2939 miRNA: ath-miR2939 mfe: -27.7 kcal/mol  p-value: 0.000672  position:  1090  target 5' U   U   U             G 3'             GUG CUU GUGUUGUGUGUUG              UAC GAA CACAACACGCAAU   miRNA  3'     C   U               5'  target: AT1G09240.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -22.1 kcal/mol  p-value: 0.066068  position:  971  target 5' C A               A    G 3'             G AAAUGAACAAGA AC UGAU              C UUUGCUUGUUCU UG ACUA   miRNA  3' A              U         5'
Ortholog Group
Ortholog Groups: OG5_147169	Accession Taxon NP_172395 ( AT1G09240 ) Arabidopsis thaliana NP_176038 Arabidopsis thaliana NP_196114 Arabidopsis thaliana NP_200419 Arabidopsis thaliana NP_001049894 Oryza sativa Japonica Group NP_001049895 Oryza sativa Japonica Group NP_001060707 Oryza sativa Japonica Group e_gw1.325.40.1 Physcomitrella patens subsp. patens 29889.m003280 Ricinus communis 30128.m008909 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS51142 62.9 1 279 IPR004298 Nicotianamine synthase PANTHER PTHR32266 5.2E-241 2 320 No hit NA Pfam PF03059 1.5E-129 5 278 IPR004298 Nicotianamine synthase SUPERFAMILY SSF53335 1.1E-9 74 239 No hit NA