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| Locus name | AT1G68050 |
| Alias | FKF1/ADO3 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification:F-box |
| Effect for Senescence | unclear |
| Gene Description | F-box family protein (FKF1) / adagio 3 (ADO3) E3 ubiquitin ligase SCF complex F-box subunit; identical to FKF1 GI:6960305 and Adagio 3 GI:13487072 from [Arabidopsis thaliana]; contains Pfam profiles PF01344: Kelch motif, PF00785: PAC motif and PF00646: F-box domain; contains TIGRfam profile TIGR00229: PAS domain S-boxidentical to cDNA Adagio 3 (ADO3) GI:13487071 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT1G68050.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT1G68050.1
miRNA: ath-miR167a
miRNA: ath-miR167a
mfe: -28.4 kcal/mol
p-value: 0.013252
position: 1159
target 5' C G U G 3'
GGGUCGU GUUGGUAG CUUU
UCUAGUA CGACCGUC GAAG
miRNA 3' A U 5'
target: AT1G68050.1
miRNA: ath-miR167b
miRNA: ath-miR167b
mfe: -28.4 kcal/mol
p-value: 0.011764
position: 1159
target 5' C G U G 3'
GGGUCGU GUUGGUAG CUUU
UCUAGUA CGACCGUC GAAG
miRNA 3' A U 5'
target: AT1G68050.1
miRNA: ath-miR167d
miRNA: ath-miR167d
mfe: -30.6 kcal/mol
p-value: 0.004995
position: 1158
target 5' A G U G 3'
CGGGUCGU GUUGGUAG CUUU
GUCUAGUA CGACCGUC GAAG
miRNA 3' G U 5'
target: AT1G68050.1
miRNA: ath-miR779
miRNA: ath-miR779
mfe: -25.7 kcal/mol
p-value: 0.028238
position: 1089
target 5' C G U 3'
UGAGUGGCAGCGU GU AGGG
ACUCGUCGUUGUA CG UCUU
miRNA 3' U U 5'
target: AT1G68050.1
miRNA: ath-miR830
miRNA: ath-miR830
mfe: -27.5 kcal/mol
p-value: 0.001658
position: 1007
target 5' C U U A 3'
GGCUUG GCUAUUUGG GGGGA
UUGGAU UGAUAAACC CUUCU
miRNA 3' U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_150244 | |
| Cross Link | |
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| Localization | nucleus |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
