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| Locus name | AT2G27310 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification:F-box |
| Effect for Senescence | unclear |
| Gene Description | F-box family protein contains Pfam PF00646: F-box domain;; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G27310.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G27310.1
miRNA: ath-miR396a
miRNA: ath-miR396a
mfe: -25.5 kcal/mol
p-value: 0.008453
position: 686
target 5' G G C A 3'
CGG UCAG GGAAGC GUGGAA
GUC AGUU CUUUCG CACCUU
miRNA 3' A A 5'
target: AT2G27310.1
miRNA: ath-miR396b
miRNA: ath-miR396b
mfe: -24.3 kcal/mol
p-value: 0.018961
position: 687
target 5' C G C A 3'
GG UCAG GGAAGC GUGGAA
UC AGUU CUUUCG CACCUU
miRNA 3' U A A 5'
target: AT2G27310.1
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -21.6 kcal/mol
p-value: 0.073958
position: 708
target 5' A G G 3'
GAGGUGGAUGAGGAA UGG
CUUUGCUUGUUCUUU ACU
miRNA 3' A G A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_177692 | |
| Cross Link | |
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