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Locus name | AT2G29070 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Protein degradation/modification |
Effect for Senescence | unclear |
Gene Description | ubiquitin fusion degradation UFD1 family protein similar to SP|P70362 Ubiquitin fusion degradation protein 1 homolog (UB fusion protein 1) {Mus musculus}; contains Pfam profile PF03152: Ubiquitin fusion degradation protein UFD1 |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT2G29070.1 | Genomic | mRNA | CDS | Protein AT2G29070.2 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT2G29070.1 miRNA: ath-miR169d miRNA: ath-miR169d mfe: -30.5 kcal/mol p-value: 0.002150
position: 971 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.1 miRNA: ath-miR169e miRNA: ath-miR169e mfe: -30.5 kcal/mol p-value: 0.001372
position: 971 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.1 miRNA: ath-miR169f miRNA: ath-miR169f mfe: -30.5 kcal/mol p-value: 0.001365
position: 971 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.1 miRNA: ath-miR169g miRNA: ath-miR169g mfe: -30.5 kcal/mol p-value: 0.001601
position: 971 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.1 miRNA: ath-miR169h miRNA: ath-miR169h mfe: -27.9 kcal/mol p-value: 0.008427
position: 969 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.1 miRNA: ath-miR169i miRNA: ath-miR169i mfe: -27.9 kcal/mol p-value: 0.006463
position: 969 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.1 miRNA: ath-miR169j miRNA: ath-miR169j mfe: -27.9 kcal/mol p-value: 0.007168
position: 969 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.1 miRNA: ath-miR169k miRNA: ath-miR169k mfe: -27.9 kcal/mol p-value: 0.007140
position: 969 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.1 miRNA: ath-miR169l miRNA: ath-miR169l mfe: -27.9 kcal/mol p-value: 0.008181
position: 969 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.1 miRNA: ath-miR169m miRNA: ath-miR169m mfe: -27.9 kcal/mol p-value: 0.005055
position: 969 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.1 miRNA: ath-miR169n miRNA: ath-miR169n mfe: -27.9 kcal/mol p-value: 0.006622
position: 969 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.1 miRNA: ath-miR844 miRNA: ath-miR844 mfe: -27.8 kcal/mol p-value: 0.000269
position: 120 target 5' U G U 3' AGCUU UGAGCAGU UUACCG UCGAA AUUCGUUA AAUGGU miRNA 3' U G 5'
target: AT2G29070.2 miRNA: ath-miR169d miRNA: ath-miR169d mfe: -30.5 kcal/mol p-value: 0.002303
position: 895 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.2 miRNA: ath-miR169e miRNA: ath-miR169e mfe: -30.5 kcal/mol p-value: 0.001485
position: 895 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.2 miRNA: ath-miR169f miRNA: ath-miR169f mfe: -30.5 kcal/mol p-value: 0.001476
position: 895 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.2 miRNA: ath-miR169g miRNA: ath-miR169g mfe: -30.5 kcal/mol p-value: 0.001727
position: 895 target 5' A A C A 3' GG AAG UCGUCUUUGGUUCA CC UUC AGUAGGAACCGAGU miRNA 3' G G 5'
target: AT2G29070.2 miRNA: ath-miR169h miRNA: ath-miR169h mfe: -27.9 kcal/mol p-value: 0.008897
position: 893 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.2 miRNA: ath-miR169i miRNA: ath-miR169i mfe: -27.9 kcal/mol p-value: 0.006897
position: 893 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.2 miRNA: ath-miR169j miRNA: ath-miR169j mfe: -27.9 kcal/mol p-value: 0.007608
position: 893 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.2 miRNA: ath-miR169k miRNA: ath-miR169k mfe: -27.9 kcal/mol p-value: 0.007582
position: 893 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.2 miRNA: ath-miR169l miRNA: ath-miR169l mfe: -27.9 kcal/mol p-value: 0.008698
position: 893 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.2 miRNA: ath-miR169m miRNA: ath-miR169m mfe: -27.9 kcal/mol p-value: 0.005420
position: 893 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.2 miRNA: ath-miR169n miRNA: ath-miR169n mfe: -27.9 kcal/mol p-value: 0.007045
position: 893 target 5' U A C C 3' CAGG AAG UCGUCUUUGGUU GUCC UUC AGUAGGAACCGA miRNA 3' G U 5'
target: AT2G29070.2 miRNA: ath-miR844 miRNA: ath-miR844 mfe: -27.8 kcal/mol p-value: 0.000298
position: 127 target 5' U G U 3' AGCUU UGAGCAGU UUACCG UCGAA AUUCGUUA AAUGGU miRNA 3' U G 5'
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Ortholog Group | |
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Ortholog Groups: OG5_127577 | |
Cross Link | |
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