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| Locus name | AT2G33770 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification |
| Effect for Senescence | unclear |
| Gene Description | ubiquitin-conjugating enzyme family protein low similarity to ubiquitin-conjugating BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831, ubiquitin-conjugating enzyme [Mus musculus] GI:3319990; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G33770.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G33770.1
miRNA: ath-miR399a
miRNA: ath-miR399a
mfe: -36.9 kcal/mol
p-value: 0.000646
position: 942
target 5' G A U 3'
UAG GCAAAUCUCCUUUGGCA
GUC CGUUUAGAGGAAACCGU
miRNA 3' C 5'
target: AT2G33770.1
miRNA: ath-miR399a
miRNA: ath-miR399a
mfe: -41.0 kcal/mol
p-value: 0.000130
position: 739
target 5' C U A 3'
UAGGGCA AUCUCCUUUGGCA
GUCCCGU UAGAGGAAACCGU
miRNA 3' U 5'
target: AT2G33770.1
miRNA: ath-miR399a
miRNA: ath-miR399a
mfe: -41.2 kcal/mol
p-value: 0.000120
position: 606
target 5' U A 3'
UAGGGCAAAUCUUCUUUGGCA
GUCCCGUUUAGAGGAAACCGU
miRNA 3' 5'
target: AT2G33770.1
miRNA: ath-miR399b
miRNA: ath-miR399b
mfe: -33.2 kcal/mol
p-value: 0.003631
position: 942
target 5' G A A U 3'
UAG GCAA UCUCCUUUGGCA
GUC CGUU AGAGGAAACCGU
miRNA 3' C G 5'
target: AT2G33770.1
miRNA: ath-miR399b
miRNA: ath-miR399b
mfe: -35.5 kcal/mol
p-value: 0.001309
position: 739
target 5' C A A 3'
UAGGGC AU UCUCCUUUGGCA
GUCCCG UG AGAGGAAACCGU
miRNA 3' U 5'
target: AT2G33770.1
miRNA: ath-miR399b
miRNA: ath-miR399b
mfe: -37.5 kcal/mol
p-value: 0.000539
position: 606
target 5' U A A 3'
UAGGGCAA UCUUCUUUGGCA
GUCCCGUU AGAGGAAACCGU
miRNA 3' G 5'
target: AT2G33770.1
miRNA: ath-miR399c
miRNA: ath-miR399c
mfe: -33.2 kcal/mol
p-value: 0.005072
position: 942
target 5' G A A U 3'
UAG GCAA UCUCCUUUGGCA
GUC CGUU AGAGGAAACCGU
miRNA 3' C G 5'
target: AT2G33770.1
miRNA: ath-miR399c
miRNA: ath-miR399c
mfe: -35.5 kcal/mol
p-value: 0.002108
position: 739
target 5' C A A 3'
UAGGGC AU UCUCCUUUGGCA
GUCCCG UG AGAGGAAACCGU
miRNA 3' U 5'
target: AT2G33770.1
miRNA: ath-miR399c
miRNA: ath-miR399c
mfe: -37.5 kcal/mol
p-value: 0.000981
position: 606
target 5' U A A 3'
UAGGGCAA UCUUCUUUGGCA
GUCCCGUU AGAGGAAACCGU
miRNA 3' G 5'
target: AT2G33770.1
miRNA: ath-miR399e
miRNA: ath-miR399e
mfe: -36.7 kcal/mol
p-value: 0.000283
position: 940
target 5' U U A U 3'
CG AG GCAAAUCUCCUUUGGCA
GC UC CGUUUAGAGGAAACCGU
miRNA 3' 5'
target: AT2G33770.1
miRNA: ath-miR399e
miRNA: ath-miR399e
mfe: -37.2 kcal/mol
p-value: 0.000223
position: 886
target 5' U U 3'
CGA GCAAAUCUCCUUUGGCA
GCU CGUUUAGAGGAAACCGU
miRNA 3' C 5'
target: AT2G33770.1
miRNA: ath-miR399f
miRNA: ath-miR399f
mfe: -37.7 kcal/mol
p-value: 0.000555
position: 885
target 5' U A U 3'
UCG GCAAAUCUCCUUUGGCA
GGC CGUUUAGAGGAAACCGU
miRNA 3' C 5'
target: AT2G33770.1
miRNA: ath-miR399f
miRNA: ath-miR399f
mfe: -43.0 kcal/mol
p-value: 0.000067
position: 829
target 5' U U 3'
UGGGCAAAUCUCCUUUGGCA
GCCCGUUUAGAGGAAACCGU
miRNA 3' G 5'
target: AT2G33770.1
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -23.2 kcal/mol
p-value: 0.123273
position: 2991
target 5' A U C A 3'
GGAAU AACAAGA ACUGG
CUUUG UUGUUCU UGACU
miRNA 3' A C U A 5'
target: AT2G33770.1
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -24.9 kcal/mol
p-value: 0.060172
position: 329
target 5' A A G 3'
GGAAU GGCGAGAAAUUGA
CUUUG UUGUUCUUUGACU
miRNA 3' A C A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_189254 | |
| Cross Link | |
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| Mutant Image | |
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| CS8508. This mutant exhibited early leaf senescence. | |
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