Basic information
Locus name	AT5G01880
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT5G01880.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G01880.1  miRNA: ath-miR773 miRNA: ath-miR773 mfe: -26.4 kcal/mol  p-value: 0.012632  position:  965  target 5' A    A                G 3'             GAGG GGAGGUUGGGAGUGGG              CUCU UUUUCGACCUUCGUUU   miRNA  3'      G                  5'  target: AT5G01880.1  miRNA: ath-miR869 miRNA: ath-miR869 mfe: -30.6 kcal/mol  p-value: 0.001125  position:  799  target 5' A               G     A 3'             CAACAUCAGGAUUGA GCCGA              GUUGUGGUCUUAACU UGGUU   miRNA  3'                       A 5'
Ortholog Group
Ortholog Groups: OG5_142925	Accession Taxon NP_187702 Arabidopsis thaliana NP_195808 ( AT5G01880 ) Arabidopsis thaliana NP_196147 Arabidopsis thaliana NP_001044653 Oryza sativa Japonica Group NP_001055845 Oryza sativa Japonica Group estExt_gwp_gw1.C_1850017 Physcomitrella patens subsp. patens gw1.85.82.1 Physcomitrella patens subsp. patens 27704.m000146 Ricinus communis 28713.m000158 Ricinus communis 29729.m002364 Ricinus communis 29915.m000466 Ricinus communis XP_002950384 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22764 1.7E-31 11 154 No hit NA Pfam PF13639 1.3E-17 104 148 IPR001841 Zinc finger, RING-type SUPERFAMILY SSF57850 4.8E-22 104 153 No hit NA ProSiteProfiles PS50089 12.9 105 147 IPR001841 Zinc finger, RING-type SMART SM00184 5.2E-7 105 146 IPR001841 Zinc finger, RING-type
Subcellular Localization
Localization	nucleus,plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787