Basic information
Locus name	AT1G67340
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:F-box
Effect for Senescence	unclear
Gene Description	zinc finger (MYND type) family protein / F-box family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT1G67340.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G67340.1  miRNA: ath-miR780 miRNA: ath-miR780 mfe: -27.7 kcal/mol  p-value: 0.017204  position:  1099  target 5' U  G  G       G      G 3'             CC GU CAACGGU GCUAGA              GG CG GUUGUCG CGAUCU   miRNA  3' U  A  A       A        5'
Ortholog Group
Ortholog Groups: OG5_156615	Accession Taxon NP_564894 ( AT1G67340 ) Arabidopsis thaliana 165998 Chlamydomonas reinhardtii ACO65456 Micromonas sp. RCC299 NP_001045230 Oryza sativa Japonica Group NP_001046918 Oryza sativa Japonica Group NP_001052618 Oryza sativa Japonica Group 29929.m004651 Ricinus communis 30147.m014507 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF81383 5.9E-6 31 97 IPR001810 F-box domain, cyclin-like SUPERFAMILY SSF81901 4.6E-12 110 223 No hit NA Pfam PF08238 33.0 122 139 IPR006597 Sel1-like Pfam PF08238 1.6 154 192 IPR006597 Sel1-like Pfam PF08238 0.1 194 223 IPR006597 Sel1-like PANTHER PTHR12298 5.6E-42 247 378 No hit NA SUPERFAMILY SSF144232 5.9E-10 301 351 No hit NA ProSiteProfiles PS50865 10.9 304 346 IPR002893 Zinc finger, MYND-type Pfam PF01753 1.1E-8 305 346 IPR002893 Zinc finger, MYND-type
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization nucleus Evidence Localization with GFP-ORF fusion protein (GFP:cDNA) Pubmed ID 15610358
Localization 3 Localization nucleus Evidence SUBAcon Pubmed ID 23180787