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| Locus name | AT5G10930 |
| Alias | CIPK5 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification:protein kinase and phosphatases |
| Effect for Senescence | unclear |
| Gene Description | CBL-interacting protein kinase 5 (CIPK5) |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G10930.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G10930.1
miRNA: ath-miR1888
miRNA: ath-miR1888
mfe: -20.1 kcal/mol
p-value: 0.070674
position: 1171
target 5' G U 3'
UCUUC CGGAUUU GACUUA
AGAAG GUUUAGA UUGAAU
miRNA 3' A U A 5'
target: AT5G10930.1
miRNA: ath-miR865-5p
miRNA: ath-miR865-5p
mfe: -20.4 kcal/mol
p-value: 0.067614
position: 949
target 5' C U G A 3'
CUCG U UAGAUCCAGAU CG
GAGU A AUCUAGGUUUA GU
miRNA 3' U A A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_131887 | |
| Cross Link | |
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