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| Locus name | AT4G30960 |
| Alias | CIPK6 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification:protein kinase and phosphatases |
| Effect for Senescence | unclear |
| Gene Description | CBL-interacting protein kinase 6 (CIPK6) identical to CBL-interacting protein kinase 6 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT4G30960.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT4G30960.1
miRNA: ath-miR171a
miRNA: ath-miR171a
mfe: -27.7 kcal/mol
p-value: 0.015143
position: 1534
target 5' A C G C U 3'
GAUAUU GC GUGGCUC GUCG
CUAUAA CG CGCCGAG UAGU
miRNA 3' C U 5'
target: AT4G30960.1
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -26.9 kcal/mol
p-value: 0.012533
position: 1272
target 5' A C A 3'
AGGAAGAG ACGGAGA GUUA
UUCUUCUC UGCUUCU UAGU
miRNA 3' G A C 5'
target: AT4G30960.1
miRNA: ath-miR842
miRNA: ath-miR842
mfe: -30.0 kcal/mol
p-value: 0.004150
position: 367
target 5' U A G U 3'
GGA G AUGGAUCUGAC GUGG
CCU C UGCCUAGACUG UACU
miRNA 3' A G 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_212680 | |
| Cross Link | |
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