Basic information
Locus name	AT3G05360
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein kinase and phosphatases
Effect for Senescence	unclear
Gene Description	disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding
Sequence	AT3G05360.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G05360.1  miRNA: ath-miR395a miRNA: ath-miR395a mfe: -27.4 kcal/mol  p-value: 0.030067  position:  2082  target 5' C      A             U 3'             AGUUCC CUAGGCACU CAG              UCAAGG GGUUUGUGA GUC   miRNA  3' C      G         A     5'  target: AT3G05360.1  miRNA: ath-miR395d miRNA: ath-miR395d mfe: -27.4 kcal/mol  p-value: 0.031106  position:  2082  target 5' C      A             U 3'             AGUUCC CUAGGCACU CAG              UCAAGG GGUUUGUGA GUC   miRNA  3' C      G         A     5'  target: AT3G05360.1  miRNA: ath-miR395e miRNA: ath-miR395e mfe: -27.4 kcal/mol  p-value: 0.031643  position:  2082  target 5' C      A             U 3'             AGUUCC CUAGGCACU CAG              UCAAGG GGUUUGUGA GUC   miRNA  3' C      G         A     5'
Ortholog Group
Ortholog Groups: OG5_130149	Accession Taxon NP_001154519 Arabidopsis thaliana NP_001154652 Arabidopsis thaliana NP_175139 Arabidopsis thaliana NP_175225 Arabidopsis thaliana NP_177295 Arabidopsis thaliana NP_177296 Arabidopsis thaliana NP_179112 Arabidopsis thaliana NP_180114 Arabidopsis thaliana NP_180825 Arabidopsis thaliana NP_180827 Arabidopsis thaliana NP_180861 Arabidopsis thaliana NP_180864 Arabidopsis thaliana NP_180865 Arabidopsis thaliana NP_180867 Arabidopsis thaliana NP_187187 ( AT3G05360 ) Arabidopsis thaliana NP_187188 Arabidopsis thaliana NP_187216 Arabidopsis thaliana NP_187217 Arabidopsis thaliana NP_187712 Arabidopsis thaliana NP_187719 Arabidopsis thaliana NP_188941 Arabidopsis thaliana NP_188952 Arabidopsis thaliana NP_188953 Arabidopsis thaliana NP_189134 Arabidopsis thaliana NP_189137 Arabidopsis thaliana NP_189138 Arabidopsis thaliana NP_189531 Arabidopsis thaliana NP_193117 Arabidopsis thaliana NP_193118 Arabidopsis thaliana NP_193124 Arabidopsis thaliana NP_197963 Arabidopsis thaliana NP_198058 Arabidopsis thaliana NP_198833 Arabidopsis thaliana NP_566757 Arabidopsis thaliana NP_567412 Arabidopsis thaliana NP_849957 Arabidopsis thaliana 142748 Chlamydomonas reinhardtii NP_001041930 Oryza sativa Japonica Group NP_001042079 Oryza sativa Japonica Group NP_001042089 Oryza sativa Japonica Group NP_001042091 Oryza sativa Japonica Group NP_001042092 Oryza sativa Japonica Group NP_001042093 Oryza sativa Japonica Group NP_001042098 Oryza sativa Japonica Group NP_001042100 Oryza sativa Japonica Group NP_001052528 Oryza sativa Japonica Group NP_001053102 Oryza sativa Japonica Group NP_001066404 Oryza sativa Japonica Group NP_001066407 Oryza sativa Japonica Group NP_001066419 Oryza sativa Japonica Group 29601.m000437 Ricinus communis 29601.m000438 Ricinus communis 29836.m000564 Ricinus communis 29848.m004515 Ricinus communis 29848.m004518 Ricinus communis thaps1_ua_kg.chr_4000259 Thalassiosira pseudonana CCMP1335 XP_002954213 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF08263 1.5E-14 39 81 IPR013210 Leucine-rich repeat-containing N-terminal, type 2 SUPERFAMILY SSF52058 2.6E-47 69 365 No hit NA PANTHER PTHR24420 3.2E-177 118 779 No hit NA Pfam PF13516 0.0 134 154 No hit NA SMART SM00365 36.0 134 157 No hit NA SMART SM00369 79.0 134 158 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.4 136 159 IPR001611 Leucine-rich repeat PRINTS PR00019 9.6E-7 137 150 No hit NA ProSiteProfiles PS51450 4.9 160 183 IPR001611 Leucine-rich repeat Pfam PF13516 1.3 182 199 No hit NA SMART SM00365 44.0 182 202 No hit NA ProSiteProfiles PS51450 5.9 184 204 IPR001611 Leucine-rich repeat SMART SM00369 16.0 207 231 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 4.5 209 230 IPR001611 Leucine-rich repeat Pfam PF13855 3.7E-7 282 341 No hit NA SMART SM00365 430.0 304 333 No hit NA ProSiteProfiles PS51450 5.9 306 328 IPR001611 Leucine-rich repeat SMART SM00369 15.0 328 351 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.9 330 353 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 2.2E-49 377 552 No hit NA ProSiteProfiles PS51450 5.8 401 423 IPR001611 Leucine-rich repeat Pfam PF00560 0.2 402 422 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.9 450 473 IPR001611 Leucine-rich repeat Pfam PF13855 2.2E-6 453 508 No hit NA SMART SM00369 240.0 496 524 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 4.7 524 546 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 2.2E-49 603 707 No hit NA SMART SM00369 120.0 621 644 IPR003591 Leucine-rich repeat, typical subtype Pfam PF12799 1.7E-8 623 659 IPR025875 Leucine rich repeat 4 ProSiteProfiles PS51450 6.3 623 646 IPR001611 Leucine-rich repeat PRINTS PR00019 9.6E-7 645 658 No hit NA SMART SM00365 93.0 645 671 No hit NA SMART SM00369 0.2 645 669 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 7.4 647 670 IPR001611 Leucine-rich repeat
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787