Basic information
Locus name	AT4G39270
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein kinase and phosphatases
Effect for Senescence	unclear
Gene Description	leucine-rich repeat transmembrane protein kinase, putative receptor protein kinase erecta, Arabidopsis thaliana
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process protein phosphorylation molecular function ATP binding protein binding protein kinase activity protein tyrosine kinase activity
Sequence	AT4G39270.1 | Genomic | mRNA | CDS | Protein AT4G39270.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G39270.1  miRNA: ath-miR1888 miRNA: ath-miR1888 mfe: -20.4 kcal/mol  p-value: 0.111970  position:  2650  target 5' A  G    U        U    A 3'             UC UCGC AGAUCUUG CUUA              AG AGUG UUUAGAAU GAAU   miRNA  3' A  A             U      5'  target: AT4G39270.2  miRNA: ath-miR1888 miRNA: ath-miR1888 mfe: -20.4 kcal/mol  p-value: 0.114771  position:  2724  target 5' A  G    U        U    A 3'             UC UCGC AGAUCUUG CUUA              AG AGUG UUUAGAAU GAAU   miRNA  3' A  A             U      5'
Ortholog Group
Ortholog Groups: OG5_143099	Accession Taxon NP_179220 Arabidopsis thaliana NP_195638 ( AT4G39270 ) Arabidopsis thaliana NP_974713 Arabidopsis thaliana NP_001051121 Oryza sativa Japonica Group NP_001051416 Oryza sativa Japonica Group NP_001058843 Oryza sativa Japonica Group e_gw1.14.33.1 Physcomitrella patens subsp. patens e_gw1.41.28.1 Physcomitrella patens subsp. patens e_gw1.61.11.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_20516 Physcomitrella patens subsp. patens gw1.45.53.1 Physcomitrella patens subsp. patens 30170.m014044 Ricinus communis 30190.m010901 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24420 0.0 75 681 No hit NA SUPERFAMILY SSF52058 1.8E-49 97 358 No hit NA Pfam PF13855 1.6E-9 128 185 No hit NA SMART SM00369 76.0 149 173 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 3.5 197 221 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13855 2.6E-8 198 258 No hit NA SMART SM00369 5.8 245 269 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 23.0 294 317 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 1.2 297 313 IPR001611 Leucine-rich repeat SUPERFAMILY SSF56112 10.0E-33 481 661 IPR011009 Protein kinase-like domain ProSiteProfiles PS50011 19.2 501 694 IPR000719 Protein kinase, catalytic domain SMART SM00219 5.0E-5 501 685 IPR020635 Tyrosine-protein kinase, catalytic domain Pfam PF07714 4.2E-16 506 655 IPR001245 Serine-threonine/tyrosine-protein kinase catalytic domain