OGR1 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Oryza sativa

LOC_Os12g17080

Mitochondrion

ccmC

458

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
PFG_3A-10852, Dongjin background	ogr1-1	T-DNA Insertion	NA	Homozygous	NA	NA	10 days	Direct Sequencing of PCR Products	NA	Poor	Decreased	19453459
Dongjin	WT	Control	Control	No mutant	Normal	NA	NA	Direct Sequencing of PCR Products	100.00%	Complete	None	19453459

Oryza sativa

LOC_Os12g17080

Mitochondrion

cox2

167

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
PFG_3A-10853, Dongjin background	ogr1-1	T-DNA Insertion	NA	Homozygous	NA	NA	10 days	Direct Sequencing of PCR Products	0.00%	Unedited	Absent	19453459
Dongjin	WT	Control	Control	No mutant	Normal	NA	NA	Direct Sequencing of PCR Products	100.00%	Complete	None	19453459

Oryza sativa

LOC_Os12g17080

Mitochondrion

cox3

572

CDS

C-to-U

UCC=>UUC

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
PFG_3A-10853, Dongjin background	ogr1-1	T-DNA Insertion	NA	Homozygous	NA	NA	10 days	Direct Sequencing of PCR Products	NA	Poor	Decreased	19453459
Dongjin	WT	Control	Control	No mutant	Normal	NA	NA	Direct Sequencing of PCR Products	NA	High	None	19453459

Oryza sativa

LOC_Os12g17080

Mitochondrion

nad2

1457

CDS

C-to-U

UCA=>UUA

S=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	ogr1	T-DNA Insertion	NA	Heterozygous	The ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seeds	NA	10 days	Direct Sequencing of PCR Products	1.80%	Poor	Absent	19453459
Dongjin	WT	Control	Control	No mutant	Normal	NA	NA	Direct Sequencing of PCR Products	100.00%	Complete	None	19453459

Oryza sativa

LOC_Os12g17080

Mitochondrion

nad4

401

CDS

C-to-U

UCC=>UUC

S=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	ogr1	T-DNA Insertion	NA	Heterozygous	The ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seeds	NA	10 days	Direct Sequencing of PCR Products	0.00%	Unedited	Absent	19453459
Dongjin	WT	Control	Control	No mutant	Normal	NA	NA	Direct Sequencing of PCR Products	100.00%	Complete	None	19453459

Oryza sativa

LOC_Os12g17080

Mitochondrion

nad4

416

CDS

C-to-U

CCU=>CUU

P=>L

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	ogr1	T-DNA Insertion	NA	Heterozygous	The ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seeds	NA	10 days	Direct Sequencing of PCR Products	4.40%	Poor	Absent	19453459
Dongjin	WT	Control	Control	No mutant	Normal	NA	NA	Direct Sequencing of PCR Products	100.00%	Complete	None	19453459

Oryza sativa

LOC_Os12g17080

Mitochondrion

nad4

433

CDS

C-to-U

CUU=>UUU

L=>F

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
NA	ogr1	T-DNA Insertion	NA	Heterozygous	The ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seeds	NA	10 days	Direct Sequencing of PCR Products	17.10%	Poor	Absent	19453459
Dongjin	WT	Control	Control	No mutant	Normal	NA	NA	Direct Sequencing of PCR Products	100.00%	Complete	None	19453459

Editing Factor:	OGR1
Synonym:	Opaque and growth retardation 1
Description:	OGR1 is essential for RNA editing in rice mitochondria and is required for normal growth and development
Protein Family:	Pentatricopeptide repeat (PPR) protein
Subclass:	DYW
Physical Interaction:	NA
Construct Structure:	PLS-E-E+-DYW
Gene ID & Species:	LOC_Os12g17080 (Oryza sativa)
Edited Gene(s):	nad2 nad4 ccmC cox2 cox3
Editing Type(s):	C-to-U (14)
Publication(s):	[1] Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria, The Plant Journal, 2009. [doi:10.1111/j.1365-313X.2009.03909.x]

Summary

Editing Details