Plant Editosome Database
a curated database of RNA editosome in plants

OGR1 - Plant Editosome Database - BIG Data Center
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Summary

Editing Factor: OGR1
Synonym: NA
Description: Encodes a pentatricopeptide repeat DYW protein essential for RNA editing in mitochondria.
Protein Family: PPR
Subclass: DYW
Construct Structure: PLS-E-E+-DYW
Gene ID & Species: LOC_Os12g17080 (Oryza sativa)
Edited Gene(s): nad2    nad4    ccmC    cox2    cox3
Editing Type(s): C-to-U (14)
Publication(s): [1] Rice OGR1 encodes a pentatricopeptide repeat–DYW protein and is essential for RNA editing in mitochondria, The Plant Journal, 2009. [PMID=19453459]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Oryza sativa LOC_Os12g17080 Mitochondrion ccmC 458 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
PFG_3A-10852, Dongjin backgroundogr1-1T-DNA InsertionNANull alleles; HomozygousNANA10 daysDirect Sequencing of PCR ProductsNAPoorDecreased19453459
DongjinWTNo treatmentNo treatmentNo treatmentNo treatmentNANADirect Sequencing of PCR Products100.00%CompleteNone19453459
Oryza sativa LOC_Os12g17080 Mitochondrion cox2 167 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
PFG_3A-10853, Dongjin backgroundogr1-1T-DNA InsertionNANull alleles; HomozygousNANA10 daysDirect Sequencing of PCR Products0.00%UneditedAbsent19453459
DongjinWTNo treatmentNo treatmentNo treatmentNo treatmentNANADirect Sequencing of PCR Products100.00%CompleteNone19453459
Oryza sativa LOC_Os12g17080 Mitochondrion cox3 572 CDS C-to-U UCC=>UUC S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
PFG_3A-10853, Dongjin backgroundogr1-1T-DNA InsertionNANull alleles; HomozygousNANA10 daysDirect Sequencing of PCR ProductsNAPoorDecreased19453459
DongjinWTNo treatmentNo treatmentNo treatmentNo treatmentNANADirect Sequencing of PCR ProductsNAHighNone19453459
Oryza sativa LOC_Os12g17080 Mitochondrion nad2 1457 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAogr1T-DNA InsertionNANull allelesThe ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seedsNA10 daysDirect Sequencing of PCR Products1.80%PoorAbsent19453459
DongjinWTNo treatmentNo treatmentNo treatmentNo treatmentNANADirect Sequencing of PCR Products100.00%CompleteNone19453459
Oryza sativa LOC_Os12g17080 Mitochondrion nad4 401 CDS C-to-U UCC=>UUC S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAogr1T-DNA InsertionNANull allelesThe ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seedsNA10 daysDirect Sequencing of PCR Products0.00%UneditedAbsent19453459
DongjinWTNo treatmentNo treatmentNo treatmentNo treatmentNANADirect Sequencing of PCR Products100.00%CompleteNone19453459
Oryza sativa LOC_Os12g17080 Mitochondrion nad4 416 CDS C-to-U CCU=>CUU P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAogr1T-DNA InsertionNANull allelesThe ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seedsNA10 daysDirect Sequencing of PCR Products4.40%PoorAbsent19453459
DongjinWTNo treatmentNo treatmentNo treatmentNo treatmentNANADirect Sequencing of PCR Products100.00%CompleteNone19453459
Oryza sativa LOC_Os12g17080 Mitochondrion nad4 433 CDS C-to-U CUU=>UUU L=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAogr1T-DNA InsertionNANull allelesThe ogr1 seeds had opaque endosperm and were slightly smaller in width and thickness than the WT (OGR1/OGR1); Mutant plants had phenotypes of growth retardation and less tillering; They flowered late and did not produce seedsNA10 daysDirect Sequencing of PCR Products17.10%PoorAbsent19453459
DongjinWTNo treatmentNo treatmentNo treatmentNo treatmentNANADirect Sequencing of PCR Products100.00%CompleteNone19453459
Last update: Jul 2021 (version 1.0)