PDM1 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: PDM1
Synonym: PDM1, SEEDLING LETHAL 1, SEL1
Description: Encodes a PPR (pentatricopeptide repeat) protein PDM1/SEL1. Involved in RNA editing and splicing of plastid genes
Protein Family: PPR
Subclass: PLS
Construct Structure: PLS
Gene ID & Species: NA (Arabidopsis thaliana)
Edited Gene(s): accD
Editing Type(s): C-to-U (1)    NA (8)
Publication(s): [1] The Analysis of the Editing Defects in the dyw2 Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins, Plants (Basel), 2020. [PMID=32098170]
[2] PPR protein PDM1/SEL1 is involved in RNA editing and splicing of plastid genes in Arabidopsis thaliana, Photosynth Res, 2015. [PMID=26123918]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana NA Plastid accD null NA NA NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0WTNo treatmentNo treatmentNo treatmentNormalNA14 daysNANANANA26123918
Col-0WTTreated with 0.5 mM DMTUGrown in MS medium for 7 daysNo treatmentNormalNA14 daysNANANANA26123918
Col-0pdm1KnockoutNAKnockoutAlbinoNA14 daysNANANANA26123918
Col-0complemented pdm1Knockout;Complementpdm1 complemented with PDM1-HAKnockoutSimilar with WTNA14 daysNANANANA26123918
SALK_034701pdm1-1T-DNA insertionNAKnockoutAlbinoNANANANANANA26123918
SALK_034701pdm1-1T-DNA insertion;Treated with 0.5 mM DMTUGrown in MS medium for 7 daysKnockoutAlbinoNANANANANANA26123918
Col-0pdm1-5A partially complemented transgenic lineNAKnockoutSmaller and variegated leaves;A dwarf phenotype with pale inflorescences and siliques, and therefore generated fewer seeds compared with WTNANANANANANA26123918
Col-0pdm1-5A partially complemented transgenic line;Treated with 0.5 mM DMTUGrown in MS medium for 7 daysKnockoutSimilar with WTNANANANANANA26123918
Arabidopsis thaliana NA Plastid accD 1568 CDS C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0WTNo treatmentNo treatmentNo treatmentNANANARNA-seq74.98%HighNone32098170
Last update: Jul 2021 (version 1.0)