PDM1 - Plant Editosome Database

Editing Factor:	PDM1
Synonym:	PDM1; SEEDLING LETHAL 1; SEL1
Description:	Encoding a PPR (pentatricopeptide repeat) protein PDM1/SEL1. Involved in RNA editing and splicing of plastid genes
Protein Family:	PPR
Subclass:	PLS
Physical Interaction:	MORF2; MORF8; MORF9
Construct Structure:	PLS
Gene ID & Species:	NA (Arabidopsis thaliana)
Edited Gene(s):	accD
Editing Type(s):	C-to-U (1) NA (8)
Publication(s):	[1] The Analysis of the Editing Defects in the Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins., Plants (Basel, Switzerland), 2020. [PMID=32098170] [2] PPR protein PDM1/SEL1 is involved in RNA editing and splicing of plastid genes in Arabidopsis thaliana., Photosynthesis research, 2015. [PMID=26123918]

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Arabidopsis thaliana

Plastid

1568

CDS

EnsemblGenomes (release 39)

BK010421

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Col-0	WT	Control	Control	Control	NA	NA	NA	RNA-seq	74.98%	High	None	32098170

Arabidopsis thaliana

Plastid

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
Col-0	WT	Control	Control	Control	Normal	NA	14 days	NA	NA	NA	NA	26123918
Col-0	WT	Treated with 0.5 mM DMTU	Grown in MS medium for 7 days	Control	Normal	NA	14 days	NA	NA	NA	NA	26123918
Col-0	pdm1	Knockout	NA	Knockout	Albino	NA	14 days	NA	NA	NA	NA	26123918
Col-0	complemented pdm1	Knockout; Complement	pdm1 complemented with PDM1-HA	Knockout	Similar with WT	NA	14 days	NA	NA	NA	NA	26123918
SALK_034701	pdm1-1	T-DNA insertion	NA	Knockout	Albino	NA	NA	NA	NA	NA	NA	26123918
SALK_034701	pdm1-1	T-DNA insertion;Treated with 0.5 mM DMTU	Grown in MS medium for 7 days	Knockout	Albino	NA	NA	NA	NA	NA	NA	26123918
Col-0	pdm1-5	A partially complemented transgenic line	NA	Knockout	Smaller and variegated leaves; A dwarf phenotype with pale inflorescences and siliques, and therefore generated fewer seeds compared with WT	NA	NA	NA	NA	NA	NA	26123918
Col-0	pdm1-5	A partially complemented transgenic line;Treated with 0.5 mM DMTU	Grown in MS medium for 7 days	Knockout	Similar with WT	NA	NA	NA	NA	NA	NA	26123918