PPR_98 - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: PPR_98
Synonym: Phypa_224041
Description: PpPPR_98 is an editing factor for the atp9-C92 site; The recombinant PpPPR_98 protein bound to the upstream sequence of the editing site that was created by splicing of atp9 transcript
Protein Family: Pentatricopeptide repeat (PPR)
Subclass: DYW
Physical Interaction: NA
Construct Structure: PLS-E/E+-DYW
Gene ID & Species: PP1S276_42V6 (Physcomitrium patens)
Edited Gene(s): atp9
Editing Type(s): C-to-U (2)
Publication(s): [1] Two DYW Subclass PPR Proteins are Involved in RNA Editing of ccmFc and atp9 Transcripts in the Moss Physcomitrella patens: First Complete Set of PPR Editing Factors in Plant Mitochondria, Plant Cell Physiology, 2013. [PMID=24058147]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Physcomitrium patens PP1S276_42V6 Mitochondrion atp9 92 CDS NA NA NA NA C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlNo mutantNormalProtonema4 daysDirect Sequencing of PCR Products100.00%CompleteNone24058147
NA98KDGene cassetteThe hpt cassette is inserted into the 50-untranslated region (UTR)KnockdownThe mutant grew as well as the wild-type mossesProtonema4 daysDirect Sequencing of PCR Products70.00%HighDecreased24058147
Last update: Feb 2026 (version 2.0)