atp9 - Plant Editosome Database - BIG Data Center

Summary

Gene: atp9
Function: ATP synthase
Species: 36
Editing Factors:8 (DYW2, EMP21, MEF37, MORF1, OTP90, PGN, PpPPR_98, SlORRM4)
Editing Types:
C-to-U (322)
U-to-C (9)
Editing Events: 367 (C-to-U: 322   NA: 36   U-to-C: 9)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Arabidopsis thalianaMitochondrion8
C-to-U: 8
278947
278977
279061
279118
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
CCA=>CUA
UCA=>UUA
UCA=>UUA
S=>L
P=>L
S=>L
S=>L
S=>L
P=>L
S=>L
S=>L
Asclepias syriacaMitochondrion4
NA: 4
411406-411630
47130-47354
CDS
CDS
CDS
CDS
+
-
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Atrichum angustatumMitochondrion1
C-to-U: 1
114518CDS+C-to-UCAA=>UAAQ=>TERM
Batis maritimaMitochondrion1
NA: 1
207359-207583CDS-NANA=>NANA=>TERM
Beta macrocarpaMitochondrion5
C-to-U: 5
320202
320232
320278
320394
320405
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
CGA=>UGA
AUC=>AUU
UCA=>UUA
S=>L
S=>L
R=>TERM
I=>I
S=>L
Beta vulgaris subsp. maritimaMitochondrion5
C-to-U: 5
320239
320269
320315
320431
320442
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGA=>UGA
UCA=>UUA
AUC=>AUU
UCA=>UUA
S=>L
R=>TERM
S=>L
I=>I
S=>L
Beta vulgaris subsp. vulgarisMitochondrion5
C-to-U: 5
72369
72380
72496
72542
72572
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGA=>UGA
UCA=>UUA
AUC=>AUU
UCA=>UUA
UCA=>UUA
R=>TERM
S=>L
I=>I
S=>L
S=>L
Brassica napusMitochondrion8
C-to-U: 8
112454
112484
112568
112625
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
P=>L
S=>L
S=>L
S=>L
P=>L
S=>L
S=>L
S=>L
Carica papayaMitochondrion1
NA: 1
440836-441060CDS-NANA=>NANA=>NA
Citrullus lanatusMitochondrion7
C-to-U: 7
242719
242749
242795
242833
242890
242911
242922
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGA=>UGA
UCA=>UUA
UCA=>UUA
CCA=>CUA
UCA=>UUA
AUC=>AUY
S=>L
R=>TERM
S=>L
S=>L
P=>L
S=>L
I=>I
Cucumis sativusMitochondrion1
NA: 1
1310084-1310308CDS+NANA=>NANA=>NA
Cucurbita pepoMitochondrion6
C-to-U: 6
394399
394410
394431
394488
394572
394602
CDS
CDS
CDS
CDS
CDS
CDS
-
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGA=>UGA
UCA=>UUA
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
R=>TERM
S=>L
P=>L
S=>L
S=>L
S=>L
Cycas taitungensisMitochondrion2
C-to-U: 2
307144CDS
CDS
-C-to-U
C-to-U
CGA=>UGA
CGA=>UGA
R=>TERM
R=>TERM
Ginkgo bilobaMitochondrion1
NA: 1
26537-26761CDS-NANA=>NANA=>NA
Hibiscus cannabinusMitochondrion2
C-to-U: 2
200418-200681
4544-4807
CDS
CDS
+
-
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>TERM
NA=>TERM
Ipomoea nilMitochondrion2
C-to-U: 2
256730-256987CDS
CDS
-C-to-U
C-to-U
CGA=>UGA
CGA=>UGA
R=>TERM
R=>TERM
Lagerstroemia indicaMitochondrion2
NA: 2
116408-116632CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Liriodendron tulipiferaMitochondrion2
NA: 2
136650-136874CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lotus japonicusMitochondrion2
C-to-U: 2
229056CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Millettia pinnataMitochondrion4
C-to-U: 4
248225
248255
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
S=>L
Nelumbo nuciferaMitochondrion17
C-to-U: 17
275129-275353
275131
275139
275142
275149
275151
275163
275172
275220
275258
275262
275264
275271
275272
275273
275304
275334
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCU=>CUU
AUC=>AUU
CCA=>CUA
UCG=>UUG
UCG=>UUG
UCA=>UUA
UCU=>UUU
UCA=>UUA
GUC=>GUU
CGA=>UGA
NA=>NA
UCC=>UCU
CCU=>UCU
UCA=>UUA
UCC=>UUC
UCA=>UUA
CUG=>UUG
P=>L
I=>I
P=>L
S=>L
S=>L
S=>L
S=>F
S=>L
V=>V
R=>TERM
NA=>TERM
S=>S
P=>S
S=>L
S=>F
S=>L
L=>L
Nothoceros aenigmaticusMitochondrion6
NA: 4
U-to-C: 2
35712-35841
35807
38773-38867
NA
CDS
CDS
CDS
CDS
NA
+
-
U-to-C
NA
NA
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion42
C-to-U: 40
U-to-C: 2
62449
62454
62460
62463
62478
62539
62541
62550
62559
62592
62610
62634
62640
62643
62661
62664
62670
62681
62749
62919
62958
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
3'UTR
CDS
CDS
3'UTR
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
3'UTR
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
3'UTR
5'UTR
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGA=>UGA
UCU=>UUU
UCU=>UUU
NA=>NA
UCU=>UUU
CCA=>CUA
ACU=>AUU
NA=>NA
UCU=>UUU
ACU=>AUU
NA=>NA
NA=>NA
UUU=>UCU
CCA=>CUA
CCA=>CUA
UUU=>UCU
CCA=>CUA
GUC=>GUU
UCU=>UUU
NA=>NA
UCU=>UUU
ACG=>AUG
CCA=>CUA
NA=>NA
GUC=>GUU
CCA=>CUA
NA=>NA
UCG=>UUG
UCA=>UUA
ACG=>AUG
UCG=>UUG
UCA=>UUA
CCG=>CUG
UCG=>UUG
NA=>NA
UCG=>UUG
NA=>NA
NA=>NA
UCA=>UUA
CGA=>UGA
CCG=>CUG
S=>L
R=>TERM
S=>F
S=>F
NA=>NA
S=>F
P=>L
T=>I
NA=>NA
S=>F
T=>I
NA=>NA
NA=>NA
F=>S
P=>L
P=>L
F=>S
P=>L
V=>V
S=>F
NA=>NA
S=>F
T=>M
P=>L
NA=>NA
V=>V
P=>L
NA=>NA
S=>L
S=>L
T=>M
S=>L
S=>L
P=>L
S=>L
NA=>NA
S=>L
NA=>NA
NA=>NA
S=>L
R=>TERM
P=>L
Oryza sativa Indica GroupMitochondrion2
C-to-U: 2
264308CDS
CDS
+C-to-U
C-to-U
CGA=>UGA
CGA=>UGA
R=>TERM
R=>TERM
Oryza sativa Japonica GroupMitochondrion8
C-to-U: 8
263160
263221
263222
263232
263331
263345
263352
263363
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCG=>UUG
CCA=>CUA
GUC=>GUU
CGA=>UGA
UCA=>UUA
CUC=>UUC
CUG=>UUG
S=>L
S=>L
P=>L
V=>V
R=>TERM
S=>L
L=>F
L=>L
Phaeoceros laevisMitochondrion3
NA: 2
U-to-C: 1
72307-72436
72402
75367-75461
CDS
NA
CDS
-
+
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phlegmariurus squarrosusMitochondrion1
C-to-U: 1
29217CDS+C-to-UCAA=>UAAQ=>TERM
Phoenix dactyliferaMitochondrion10
C-to-U: 10
293973
294003
294035
294045
294087
294135
294144
294156
294165
294176
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGA=>UGA
CCA=>CUA
UCG=>UUG
UCA=>UUA
UCA=>UUA
UCG=>UUG
CUC=>UUC
UCU=>UUU
UCA=>UUA
S=>L
R=>TERM
P=>L
S=>L
S=>L
S=>L
S=>L
L=>F
S=>F
S=>L
Pleurozia purpureaMitochondrion3
C-to-U: 1
NA: 2
151273-151410
151275
154342-154428
CDS
NA
CDS
-
+
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Psilotum nudumMitochondrion14
C-to-U: 14
148104
148109
148169
148172
148181
148189
148223
148241
148271
148280
148295
148299
148305
148312
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
GCA=>GUA
UCA=>UUA
UCA=>UUA
UCG=>UUG
UUC=>UUU
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCU=>UUU
AUC=>AUU
GCC=>GCU
UCG=>UUG
CCC=>UCC
CGA=>UGA
A=>V
S=>L
S=>L
S=>L
F=>F
S=>L
S=>L
S=>L
S=>F
I=>I
A=>A
S=>L
P=>S
R=>TERM
Ptychomnion cygnisetumMitochondrion1
C-to-U: 1
103971CDS+C-to-UCAA=>UAAQ=>TERM
Rhazya strictaMitochondrion20
C-to-U: 20
140278
140286
140289
140296
140310
140319
140409
140419
140420
140481
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUG=>UUG
UCG=>UUG
UCG=>UUG
GUC=>GUU
CGA=>UGA
UCA=>UUA
UCC=>UUC
CUG=>UUG
CCA=>CUA
UCG=>UUG
CUU=>UUU
UCA=>UUA
UCC=>UUC
UCA=>UUA
CCA=>CUA
UCG=>UUG
CUU=>UUU
GUC=>GUU
CGA=>UGA
UCA=>UUA
L=>L
S=>L
S=>L
V=>V
R=>TERM
S=>L
S=>F
L=>L
P=>L
S=>L
L=>F
S=>L
S=>F
S=>L
P=>L
S=>L
L=>F
V=>V
R=>TERM
S=>L
Zea mays subsp. maysMitochondrion21
C-to-U: 21
299251
299272
299281
299329
299371
299381
299443
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCG=>UUG
UCA=>UUA
UCA=>UUA
UCG=>UUG
UCG=>UUG
UCA=>UUA
CUC=>UUC
UCG=>UUG
CCA=>CUA
CUC=>UUC
UCA=>UUA
UCA=>UUA
CCA=>CUA
UCG=>UUG
UCA=>UUA
UCA=>UUA
UCG=>UUG
UCA=>UUA
CUC=>UUC
UCA=>UUA
P=>L
S=>L
S=>L
S=>L
S=>L
S=>L
S=>L
L=>F
S=>L
P=>L
L=>F
S=>L
S=>L
P=>L
S=>L
S=>L
S=>L
S=>L
S=>L
L=>F
S=>L
Ziziphus jujubaMitochondrion2
NA: 2
129578-129802CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)