PpPPR_98 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: PpPPR_98
Synonym: Phypa_224041
Description: Encoding DYW subclass PPR protein as RNA editing factor for atp9
Protein Family: PPR
Subclass: DYW
Construct Structure: PLS-E/E+-DYW
Gene ID & Species: PP1S276_42V6 (Physcomitrium patens)
Edited Gene(s): atp9
Editing Type(s): C-to-U (2)
Publication(s): [1] Two DYW subclass PPR proteins are involved in RNA editing of ccmFc and atp9 transcripts in the moss Physcomitrella patens: first complete set of PPR editing factors in plant mitochondria., Plant & cell physiology, 2013. [PMID=24058147]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Physcomitrium patens PP1S276_42V6 Mitochondrion atp9 92 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalProtonema4 daysDirect Sequencing of PCR Products100.00%CompleteNone24058147
NA98KDGene cassetteThe hpt cassette is inserted into the 50-untranslated region (UTR)KnockdownThe mutant grew as well as the wild-type mossesProtonema4 daysDirect Sequencing of PCR Products70.00%HighDecreased24058147
Last update: Jul 2021 (version 1.0)