PpPPR_98 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: PpPPR_98
Synonym: Phypa_224041
Description: Encodes DYW subclass PPR protein as RNA editing factor for atp9 site.
Protein Family: PPR
Subclass: DYW
Construct Structure: PLS-E/E+-DYW
Gene ID & Species: PP1S276_42V6 (Physcomitrella patens)
Edited Gene(s): atp9
Editing Type(s): C-to-U (2)
Publication(s): [1] Two DYW Subclass PPR Proteins are Involved in RNA Editing of ccmFc and atp9 Transcripts in the Moss Physcomitrella patens: First Complete Set of PPR Editing Factors in Plant Mitochondria, Plant Cell Physiology, 2013. [PMID=24058147]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Physcomitrella patens PP1S276_42V6 Mitochondrion atp9 92 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentProtonema4 daysDirect Sequencing of PCR Products100.00%CompleteNone24058147
NA98KDGene CassetteThe hpt cassette is inserted into the 50-untranslated region (UTR)KnockdownThe mutant grew as well as the wild-type mossesProtonema4 daysDirect Sequencing of PCR Products70.00%HighDecreased24058147
Last update: Jul 2021 (version 1.0)