RF1A - Plant Editosome Database - CNCB-NGDC

RF1A - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor:	RF1A
Synonym:	NA
Description:	Encoding a protein that plays an additional role in promoting the editing of atp6 mRNAs, independent of its cleavage function.
Protein Family:	PPR
Subclass:	P
Physical Interaction:	NA
Construct Structure:	NA
Gene ID & Species:	LOC_Os10g35440 (Oryza sativa)
Edited Gene(s):	atp6
Editing Type(s):	C-to-U (9)
Publication(s):	[1] Cytoplasmic male sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing., The Plant cell, 2006. [PMID=16489123]

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Oryza sativa

LOC_Os10g35440

Mitochondrion

13

CDS

NA

NA

NA

NA

C-to-U

CAC=>UAC

H=>Y

Recoding

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
CMS-BT (KFA)	CMS-BT (KFA)	NA	NA	NA	Male-sterility phenotype appears in male gametophytes	Panicle	NA	Direct Sequencing of PCR Products	43.60%	Medium	None	16489123
CMS-BT (KFA)	CMS-BT (KFA)	NA	NA	NA	Male-sterility phenotype appears in male gametophytes	Panicle	NA	Direct Sequencing of PCR Products	44.40%	Medium	None	16489123
CMS-BT (KFA)	Rf1a-T1	Transformation	Rf1A is introduced by transformation	NA	NA	Panicle	NA	Direct Sequencing of PCR Products	69.70%	High	Increased	16489123
CMS-BT (KFA)	Rf1a-T1	Transformation	Rf1A is introduced by transformation	NA	NA	Panicle	NA	Direct Sequencing of PCR Products	90.30%	High	Increased	16489123
CMS-BT (KFA)	Rf1a-T2	Transformation	Rf1A is introduced by transformation	NA	NA	Panicle	NA	Direct Sequencing of PCR Products	45.20%	Medium	Similar	16489123
CMS-BT (KFA)	Rf1a-T2	Transformation	Rf1A is introduced by transformation	NA	NA	Panicle	NA	Direct Sequencing of PCR Products	43.30%	Medium	Similar	16489123
CMS-BT (KFA)	Hyb	Transformation	Rf1A is introduced by crossing	NA	NA	Panicle	NA	Direct Sequencing of PCR Products	65.20%	High	Increased	16489123
CMS-BT (KFA)	Hyb	Transformation	Rf1A is introduced by crossing	NA	NA	Panicle	NA	Direct Sequencing of PCR Products	82.30%	High	Increased	16489123
CMS-BT (KFA)	maintainer line (KFB)	NA	NA	NA	NA	Panicle	NA	Direct Sequencing of PCR Products	48.50%	Medium	None	16489123

Last update: Feb 2026 (version 2.0)