SEL1 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: SEL1
Synonym: Seedling Lethal 1, PDM1
Description: Encodes a pentatricopeptide repeat protein lacking an E/E+ or DYW domain in Arabidopsis, is involved in plastid gene expression and early chloroplast development.
Protein Family: PPR
Subclass: PLS
Construct Structure: PLS
Gene ID & Species: AT4G18520 (Arabidopsis thaliana)
Edited Gene(s): accD
Editing Type(s): C-to-U (4)
Publication(s): [1] Seedling Lethal1, a Pentatricopeptide Repeat Protein Lacking an E/E+ or DYW Domain in Arabidopsis, Is Involved in Plastid Gene Expression and Early Chloroplast Development, Plant Physiology, 2013. [PMID=24144791]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT4G18520 Chloroplast accD 794 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Wassilewskija-2sel1T-DNA InsertionCollection of T-DNA insertion mutants in Arabidopsis (ecotype Wassilewskija-2 [Ws-2] background) and isolated several seedling-lethal mutants with pigment-defective phenotypesHomozygousExhibited a pigment-defective and seedling-lethal phenotypeSeedling7 daysDirect Sequencing of PCR Products16.00%PoorDecreased24144791
NAWTNo treatmentNo treatmentNo treatmentNo treatmentSeedling7 daysDirect Sequencing of PCR Products100.00%CompleteNone24144791
Arabidopsis thaliana AT4G18520 Chloroplast accD 1568 3'UTR C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Wassilewskija-2sel1T-DNA InsertionCollection of T-DNA insertion mutants in Arabidopsis (ecotype Wassilewskija-2 [Ws-2] background) and isolated several seedling-lethal mutants with pigment-defective phenotypesHomozygousExhibited a pigment-defective and seedling-lethal phenotypeSeedling7 daysDirect Sequencing of PCR Products0.00%UneditedAbsent24144791
NAWTNo treatmentNo treatmentNo treatmentNo treatmentSeedling7 daysDirect Sequencing of PCR Products91.00%HighNone24144791
Last update: Jul 2021 (version 1.0)