Plant Editosome Database
a curated database of RNA editosome in plants

WSP1 - Plant Editosome Database - BIG Data Center
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Summary

Editing Factor: WSP1
Synonym: NA
Description: Encodes the RNA editing factor essential for chloroplast development in rice.
Protein Family: MORF/RIP
Subclass: NA
Construct Structure: NA
Gene ID & Species: LOC_OS04G51280 (Oryza sativa)
Edited Gene(s): rpoB    rps14    ndhG    ndhD
Editing Type(s): C-to-U (12)
Publication(s): [1] The RNA Editing Factor WSP1 Is Essential for Chloroplast Development in Rice, Molecular Plant, 2017. [PMID=27622591]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Oryza sativa LOC_OS04G51280 Chloroplast ndhD 878 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
japonica cultivar Nipponbarewsp1T-DNA InsertionThe T-DNA insertion causes a single base change in the third one within exon 3 (Leu - His )HomozygousWhite-stripe leaves and panicles, a chloroplast developmental defect and reduced chlorophyll accumulationLeaf4 weeksDirect Sequencing of PCR Products0.00%UneditedAbsent27622591
japonica cultivar NipponbareWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf4 weeksDirect Sequencing of PCR ProductsNAHighNone27622591
Oryza sativa LOC_OS04G51280 Chloroplast ndhG -11 CDS C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
japonica cultivar Nipponbarewsp1T-DNA InsertionThe T-DNA insertion causes a single base change in the third one within exon 3 (Leu - His )HomozygousWhite-stripe leaves and panicles, a chloroplast developmental defect and reduced chlorophyll accumulationLeaf4 weeksDirect Sequencing of PCR Products0.00%UneditedAbsent27622591
japonica cultivar NipponbareWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf4 weeksDirect Sequencing of PCR ProductsNAHighNone27622591
Oryza sativa LOC_OS04G51280 Chloroplast rpoB 467 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
japonica cultivar Nipponbarewsp1T-DNA InsertionThe T-DNA insertion causes a single base change in the third one within exon 3 (Leu - His )HomozygousWhite-stripe leaves and panicles, a chloroplast developmental defect and reduced chlorophyll accumulationLeaf4 weeksDirect Sequencing of PCR Products0.00%UneditedAbsent27622591
japonica cultivar NipponbareWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf4 weeksDirect Sequencing of PCR ProductsNAHighNone27622591
Oryza sativa LOC_OS04G51280 Chloroplast rpoB 545 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
japonica cultivar Nipponbarewsp1T-DNA InsertionThe T-DNA insertion causes a single base change in the third one within exon 3 (Leu - His )HomozygousWhite-stripe leaves and panicles, a chloroplast developmental defect and reduced chlorophyll accumulationLeaf4 weeksDirect Sequencing of PCR Products0.00%UneditedAbsent27622591
japonica cultivar NipponbareWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf4 weeksDirect Sequencing of PCR ProductsNAHighNone27622591
Oryza sativa LOC_OS04G51280 Chloroplast rpoB 560 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
japonica cultivar Nipponbarewsp1T-DNA InsertionThe T-DNA insertion causes a single base change in the third one within exon 3 (Leu - His )HomozygousWhite-stripe leaves and panicles, a chloroplast developmental defect and reduced chlorophyll accumulationLeaf4 weeksDirect Sequencing of PCR Products0.00%UneditedAbsent27622591
japonica cultivar NipponbareWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf4 weeksDirect Sequencing of PCR ProductsNAHighNone27622591
Oryza sativa LOC_OS04G51280 Chloroplast rps14 80 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
japonica cultivar Nipponbarewsp1T-DNA InsertionThe T-DNA insertion causes a single base change in the third one within exon 3 (Leu - His )HomozygousWhite-stripe leaves and panicles, a chloroplast developmental defect and reduced chlorophyll accumulationLeaf4 weeksDirect Sequencing of PCR Products0.00%UneditedAbsent27622591
japonica cultivar NipponbareWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf4 weeksDirect Sequencing of PCR ProductsNAHighNone27622591
Last update: Jul 2021 (version 1.0)