rps14 - Plant Editosome Database - BIG Data Center

Summary

Gene: rps14
Function: Ribosomal protein
Species: 36
Editing Factors:18 (DYW2, ECD1, EMB2261, ISE2, MEF37, MORF2, MORF9, ORRM1, ORRM1,ORRM6, ORRM6, OsSLC1, OTP86, OTP90, PGN, PpPPR_45, PpPPR_78, WSP1, YL)
Editing Types:
C-to-U (157)
U-to-C (36)
Editing Events: 211 (C-to-U: 157   U-to-C: 36   NA: 18)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Anthoceros angustusChloroplast5
C-to-U: 2
NA: 1
U-to-C: 2
54239-54541
54264
54265
54294
54495
NA
NA
NA
CDS
NA
+
-
U-to-C
C-to-U
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Arabidopsis lyrata subsp. lyrata MN47Chloroplast2
C-to-U: 2
37010
37079
NA
NA
+C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Arabidopsis thalianaChloroplast4
C-to-U: 4
37092
37161
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
CCA=>CUA
CCA=>CUA
S=>L
S=>L
P=>L
P=>L
Athyrium anisopterumChloroplast2
C-to-U: 1
NA: 1
36126-36428
36427
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast2
C-to-U: 1
NA: 1
36129-36431
36131
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast2
C-to-U: 1
NA: 1
36109-36411
36410
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast4
C-to-U: 4
35667
35736
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
UCA=>UUA
UCA=>UUA
P=>L
P=>L
S=>L
S=>L
Cuscuta gronoviiChloroplast2
C-to-U: 2
15043
15112
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Cuscuta reflexaChloroplast2
C-to-U: 2
31642
31711
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Cypripedium macranthosChloroplast2
C-to-U: 2
37075
37144
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
S=>L
P=>L
Dendrobium officinaleChloroplast1
C-to-U: 1
37316CDS-C-to-UCCA=>CUAP=>L
Deparia pycnosoraChloroplast2
C-to-U: 1
NA: 1
36114-36449
36149
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast3
C-to-U: 2
NA: 1
36698-37000
36700
36999
NA
NA
CDS
+
-
C-to-U
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast2
C-to-U: 1
NA: 1
36070-36372
36072
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Forsythia suspensaChloroplast2
C-to-U: 2
39321
39390
CDS
CDS
-C-to-U
C-to-U
CCA=>CUA
UCA=>UUA
P=>L
S=>L
Hevea brasiliensisChloroplast2
C-to-U: 2
40575
40644
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
S=>L
P=>L
Homalosorus pycnocarposChloroplast3
C-to-U: 2
NA: 1
36664-36966
36666
36965
CDS
NA
NA
-
+
NA
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast2
C-to-U: 2
50856
50925
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Linum usitatissimumChloroplast1
C-to-U: 1
31744CDS-C-to-UCCC=>CUCP=>L
Lotus japonicusMitochondrion4
C-to-U: 4
276031
76837
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
CCU=>UCU
CCU=>UCU
CCU=>UCU
CCU=>UCU
P=>S
P=>S
P=>S
P=>S
Millettia pinnataMitochondrion2
C-to-U: 2
378809CDS
CDS
+C-to-U
C-to-U
CCU=>UCU
CCU=>UCU
P=>S
P=>S
Nelumbo nuciferaMitochondrion2
C-to-U: 2
512561
512638
CDS
CDS
+C-to-U
C-to-U
UCC=>UUC
CCU=>UCU
S=>F
P=>S
Nicotiana sylvestrisChloroplast4
C-to-U: 4
38735
38804
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCA=>UUA
UCA=>UUA
CCA=>CUA
P=>L
S=>L
S=>L
P=>L
Nicotiana tomentosiformisChloroplast2
C-to-U: 2
38664
38733
CDS
CDS
-C-to-U
C-to-U
CCA=>CUA
UCA=>UUA
P=>L
S=>L
Nothoceros aenigmaticusMitochondrion12
C-to-U: 2
NA: 2
U-to-C: 8
47670-48014
47720
47792
47867
47996
48013
NA
CDS
NA
NA
CDS
NA
NA
NA
NA
NA
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA
U-to-C
C-to-U
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nothoceros aenigmaticusPlastid2
NA: 2
55778-56083NA
NA
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast2
C-to-U: 1
NA: 1
36124-36426
36425
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion38
C-to-U: 30
U-to-C: 8
122760
122789
122840
122895
122904
123036
123053
123115
123145
123164
123221
123225
123266
123282
123289
123323
123352
123353
123410
5'UTR
CDS
5'UTR
CDS
CDS
CDS
5'UTR
CDS
5'UTR
CDS
CDS
5'UTR
CDS
5'UTR
5'UTR
CDS
5'UTR
CDS
CDS
CDS
CDS
5'UTR
CDS
5'UTR
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
5'UTR
CDS
5'UTR
NAC-to-U
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
NA=>NA
UGA=>CGA
NA=>NA
GCA=>GUA
UUU=>UCU
CCC=>CCU
NA=>NA
UGA=>CGA
NA=>NA
CAC=>UAC
CUU=>UUU
NA=>NA
CCC=>CCU
NA=>NA
NA=>NA
UCC=>UCU
NA=>NA
CAC=>UAC
CUU=>UUU
CCU=>CUU
UCG=>UUG
NA=>NA
UCC=>UCU
NA=>NA
CUG=>UUG
UUU=>UCU
NA=>NA
CCU=>CUU
UCG=>UUG
UCG=>UUG
CUG=>UUG
UUU=>UCU
NA=>NA
GCA=>GUA
UUU=>UCU
NA=>NA
UCG=>UUG
NA=>NA
NA=>NA
TERM=>R
NA=>NA
A=>V
F=>S
P=>P
NA=>NA
TERM=>R
NA=>NA
H=>Y
L=>F
NA=>NA
P=>P
NA=>NA
NA=>NA
S=>S
NA=>NA
H=>Y
L=>F
P=>L
S=>L
NA=>NA
S=>S
NA=>NA
L=>L
F=>S
NA=>NA
P=>L
S=>L
S=>L
L=>L
F=>S
NA=>NA
A=>V
F=>S
NA=>NA
S=>L
NA=>NA
Panicum virgatumChloroplast1
C-to-U: 1
38255CDSNAC-to-UNA=>NAS=>L
Pelargonium alternansChloroplast2
C-to-U: 2
50503
50572
CDS
CDS
+C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Phalaenopsis equestrisChloroplast1
C-to-U: 1
38605CDS-C-to-UUCA=>UUAS=>L
Physcomitrella patensChloroplast1
C-to-U: 1
40432CDS+C-to-UACG=>AUGT=>M
Psilotum nudumMitochondrion11
C-to-U: 10
U-to-C: 1
285540
285772
285840
286030
286091
286145
286173
286179
286221
286261
286418
CDS
5'UTR
5'UTR
CDS
CDS
5'UTR
CDS
CDS
5'UTR
5'UTR
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
NA=>NA
NA=>NA
CCU=>CUU
CAC=>UAC
NA=>NA
UAG=>CAG
UCA=>UUA
NA=>NA
NA=>NA
UCC=>UCU
S=>F
NA=>NA
NA=>NA
P=>L
H=>Y
NA=>NA
TERM=>Q
S=>L
NA=>NA
NA=>NA
S=>S
Saccharum hybrid cultivar SP80-3280Chloroplast1
C-to-U: 1
101076CDS-C-to-UUCA=>UUAS=>L
Schizaea pectinataChloroplast2
NA: 1
U-to-C: 1
29376-29678
29606
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Solanum lycopersicumChloroplast3
C-to-U: 3
37894CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)